Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0140 ATGATGATTATGAAGAGGTGGAACGGGTTTTGTTATGCTGTGTCGCGCCAAGATGATGATTACCTGGAGTTGGGGACACCTGAGATTGAAGACAGAACCTATAAATTGCAACGTGGCCCGTCACAGTTTCCGTGCAGAAGGCCGCCCCGTCATGGAAATTCCCTCCCCGTCCCGTTAGCTCCGTTTCGAATCAACGTTTCAGTTTTCAGGAGATCGTCGGTTGATTCCGTCTCCGTTCCGGCGATTTTATCTTCGTCATTTCCAGCGATGTCGATTAAGACTGTCAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATATCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGAATATCTTGAAATGCAGAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTAACCTTTAAGGACACGCAAGGAGCAGAGACTGCCGTTCTTTTGTCCGGAGCAACTATAGTGGATCTTTCTGTGAACATCACTCTGTGTCCTGATTACGAGCTCCCTCCCGAAGCTACCGCACCACCACCTGCCCCTGGAACTAAAGCACCTGGTGCTGCTGAATCTGCCTTTCGGAAAGCAGAGGATGTGGTGAGCGGCATGCTAGCCAAGGGCTTTATCTTGGGTAAAGATGCACTCAACTCGGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACGGCTTCAGCTAAAGTTGCTACATTGGATAAAAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTAGACCAGAAGTTCCAGGTTTCCGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAAAAAGTTAGCAATGCTGGATCTGCCATTATGAAAAACCGATATGTAATGAGCGGGACCAGCTGGGTTGCTGATGCTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAGTCGTGGTGTCGGAAGAAGAACAGAAAAAGAAGACGGTCGAAGATTTTGCTAAGATTCATCTTTCGGAATCCCCAAAAGCAGCATCGGCGCCTCCTGAGGAGCCTCAACAACGTCCCAAGCCCGAACCAGCTCAAGGTCTGATCCTCTGA 1122 47.59 MMIMKRWNGFCYAVSRQDDDYLELGTPEIEDRTYKLQRGPSQFPCRRPPRHGNSLPVPLAPFRINVSVFRRSSVDSVSVPAILSSSFPAMSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSESERSQIAYVTFKDTQGAETAVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKAPGAAESAFRKAEDVVSGMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADAFNKVAKAAGEVGQKTKEKVVVSEEEQKKKTVEDFAKIHLSESPKAASAPPEEPQQRPKPEPAQGLIL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1704340 1712689 - ClG42_10g0014000.10 Clacu10g0140 258764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0140 373 CDD RRM_Vip1_like 95 163 IPR034360 -
Clacu10g0140 373 FunFam RNA recognition motif-containing protein 90 163 - -
Clacu10g0140 373 SMART rrm1_1 94 163 IPR000504 GO:0003723(InterPro)
Clacu10g0140 373 MobiDBLite consensus disorder prediction 329 345 - -
Clacu10g0140 373 SUPERFAMILY RNA-binding domain, RBD 87 167 IPR035979 GO:0003676(InterPro)
Clacu10g0140 373 MobiDBLite consensus disorder prediction 329 373 - -
Clacu10g0140 373 Gene3D - 90 163 IPR012677 -
Clacu10g0140 373 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 92 333 - -
Clacu10g0140 373 Pfam RNA recognition motif 96 155 IPR000504 GO:0003723(InterPro)
Clacu10g0140 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 167 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0561 Clacu-Chr7:7610560 Clacu10g0140 Clacu-Chr10:1704340 7.10E-61 dispersed
Clacu09g1744 Clacu-Chr9:31630072 Clacu10g0140 Clacu-Chr10:1704340 1.50E-66 dispersed
Clacu09g1876 Clacu-Chr9:33596966 Clacu10g0140 Clacu-Chr10:1704340 1.60E-22 dispersed
Clacu10g0140 Clacu-Chr10:1704340 Clacu05g2648 Clacu-Chr5:34132409 3.00E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70