Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0141 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCGTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCTTCGGGTATATTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAATACCTTAGGAACGCCGAAGGATACGCCTGAGCTACGAGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACATCCGCTAAACTTAAACAAGCCAGCGAAATAGATCATCACGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAAACTGTTCTACCTTCTAGCTACACAGCCGGCGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTAGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATCTTTAAAGATCTTGCAGTTCTAGTCCATGAACAGGGAGCTATGATTGATGATATTGGATCCAACATAGAGGGTGCCCATGCTGCAACGTCACAGGGAACAACTCAGCTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCATTGGAGTACTTGTGTTTCATGCATAAGAACCACAAACATGATAACTCTGTCAGATCGATTCTCCTGTTAGTTTCTTTTGATAAGTTTACATTGTCTTGGATCCTGTCTTCTGGGGAAAGGAAGGGTAGTGAAGGGGCTCTATGTATACTATGTCGATCCGCCTTCAGAGTATACATCGCTTCTGTCAGGCCGACCATCCTCTTCCATTTGAAAATGTTATAA 984 43.9 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLAKASKTQRSNSSLALEYLCFMHKNHKHDNSVRSILLLVSFDKFTLSWILSSGERKGSEGALCILCRSAFRVYIASVRPTILFHLKML 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1712984 1717623 + ClG42_10g0014100.10 Clacu10g0141 258765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0141 327 Gene3D - 21 134 - -
Clacu10g0141 327 Pfam Syntaxin-like protein 30 130 IPR006011 GO:0016020(InterPro)
Clacu10g0141 327 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu10g0141 327 FunFam Syntaxin-22 like 174 263 - -
Clacu10g0141 327 PANTHER SYNTAXIN 36 252 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu10g0141 327 FunFam Syntaxin-22 like 21 134 - -
Clacu10g0141 327 Pfam SNARE domain 218 253 IPR000727 -
Clacu10g0141 327 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu10g0141 327 SMART SynN_4 16 128 IPR006011 GO:0016020(InterPro)
Clacu10g0141 327 CDD SNARE_Qa 184 242 - -
Clacu10g0141 327 CDD SynN 24 147 IPR006011 GO:0016020(InterPro)
Clacu10g0141 327 SMART tSNARE_6 176 243 IPR000727 -
Clacu10g0141 327 Gene3D - 185 252 - -
Clacu10g0141 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0141 - - - 0.0