Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0143 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCTTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACTGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAGGCAATGGATTCTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTTGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGCGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCATGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGGATAAACGGGAACGCACACCTCCAGCAACGAGCAGCGCGCGCGATCAACCTCCTTGCGGGACGGCGTGCGACAAGTCACGAGCGGCGTCGAATTCTCCGGCGGATCTAGTCAAGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACGACGACGGACAGATTGTCGACGGCGCGAACACCTCCTTGCCCTTTCGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGACTGGGGCTGAGGTAGACAAGATTGCACAGTTTATGCAGATCTACAGAAGTAGGGAAGTAGGACAATCATATTTCACTTCTGTTTGGACAACTTTAATTGCCACATTGCATGCACTCTGGCTAATGCTCAAAATTAGACCTCAAGTGATTCTCTGCAATGGCCCTGGTACTTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTTCAAAGGATGTATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3468 45.18 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVDKRERTPPATSSARDQPPCGTACDKSRAASNSPADLVKQQRAILSTPQPASTTTDRLSTARTPPCPFGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADKTGAEVDKIAQFMQIYRSREVGQSYFTSVWTTLIATLHALWLMLKIRPQVILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRMYPRAHYVGCLM 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1744888 1754663 + ClG42_10g0014300.10 Clacu10g0143 258767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0143 1155 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Clacu10g0143 1155 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu10g0143 1155 Pfam Oligosaccharide biosynthesis protein Alg14 like 976 1154 IPR013969 GO:0006488(InterPro)
Clacu10g0143 1155 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Clacu10g0143 1155 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Clacu10g0143 1155 NCBIfam HAD-IIB family hydrolase 596 798 IPR006379 -
Clacu10g0143 1155 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Clacu10g0143 1155 SUPERFAMILY HAD-like 594 839 IPR036412 -
Clacu10g0143 1155 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Clacu10g0143 1155 MobiDBLite consensus disorder prediction 844 889 - -
Clacu10g0143 1155 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Clacu10g0143 1155 MobiDBLite consensus disorder prediction 898 917 - -
Clacu10g0143 1155 Gene3D - 593 710 IPR023214 -
Clacu10g0143 1155 Gene3D - 723 854 IPR023214 -
Clacu10g0143 1155 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 842 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Clacu10g0143 1155 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Clacu10g0143 1155 Gene3D Glycogen Phosphorylase B; 975 1155 - -
Clacu10g0143 1155 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 975 1155 - -
Clacu10g0143 1155 Gene3D Glycogen Phosphorylase B; 56 314 - -
Clacu10g0143 1155 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Clacu10g0143 1155 CDD HAD_TPP 595 831 - -
Clacu10g0143 1155 Gene3D Glycogen Phosphorylase B; 315 531 - -
Clacu10g0143 1155 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2471 Clacu-Chr1:35167393 Clacu10g0143 Clacu-Chr10:1744888 0.00E+00 dispersed
Clacu03g0728 Clacu-Chr3:8096689 Clacu10g0143 Clacu-Chr10:1744888 6.80E-124 dispersed
Clacu05g2718 Clacu-Chr5:34703515 Clacu10g0143 Clacu-Chr10:1744888 0.00E+00 dispersed
Clacu06g1795 Clacu-Chr6:28428550 Clacu10g0143 Clacu-Chr10:1744888 0.00E+00 dispersed
Clacu10g0143 Clacu-Chr10:1744888 Clacu11g1911 Clacu-Chr11:30076960 4.00E-126 dispersed
Clacu10g0143 Clacu-Chr10:1744888 Clacu07g0249 Clacu-Chr7:2868649 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0143 K16055 - csv:101207192 1699.49