Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0173 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATCACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGATATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGCGCTACTTAGGTTCCTGAATGTAGCTGCATTTAGGGGTTCCTTCATCAAGTCCTTCGATGTGCCATGTATTTCTTCTATTACTTTCTGTCCTAGCACTTTCCTCATTACCATCTCATTGGATTCTTTTCCAATTTCAATGTTTCCCAGCCATGATTTGTTCACTCATTTCCCTCCTAAACCCACATTTGCCAGAACACCACCTAAGCCATCTCCCTGTTTTCCCAAGCTCATCCTCTTTGCACCATCGAAACCCTAA 1323 47.92 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWALLRFLNVAAFRGSFIKSFDVPCISSITFCPSTFLITISLDSFPISMFPSHDLFTHFPPKPTFARTPPKPSPCFPKLILFAPSKP 440
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2016930 2025792 + ClG42_10g0017300.10 Clacu10g0173 258797
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0173 440 MobiDBLite consensus disorder prediction 10 92 - -
Clacu10g0173 440 MobiDBLite consensus disorder prediction 118 132 - -
Clacu10g0173 440 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Clacu10g0173 440 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Clacu10g0173 440 MobiDBLite consensus disorder prediction 315 340 - -
Clacu10g0173 440 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Clacu10g0173 440 MobiDBLite consensus disorder prediction 1 161 - -
Clacu10g0173 440 Gene3D - 169 295 - -
Clacu10g0173 440 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Clacu10g0173 440 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Clacu10g0173 440 CDD DUF296 168 280 IPR005175 -
Clacu10g0173 440 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0173 Clacu-Chr10:2016930 Clacu11g2082 Clacu-Chr11:31643692 1.20E-46 dispersed
Clacu10g0173 Clacu-Chr10:2016930 Clacu10g0174 Clacu-Chr10:2032372 1.60E-11 tandem
Clacu02g2236 Clacu-Chr2:35458015 Clacu10g0173 Clacu-Chr10:2016930 1.50E-18 transposed
Clacu08g1080 Clacu-Chr8:20814560 Clacu10g0173 Clacu-Chr10:2016930 6.30E-62 transposed
Clacu10g0173 Clacu-Chr10:2016930 Clacu05g0296 Clacu-Chr5:2562919 6.70E-13 wgd
Clacu10g0173 Clacu-Chr10:2016930 Clacu09g1218 Clacu-Chr9:12256965 8.00E-75 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0173 - - - 0.0