Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g0173 | ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATCACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGATATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGCGCTACTTAGGTTCCTGAATGTAGCTGCATTTAGGGGTTCCTTCATCAAGTCCTTCGATGTGCCATGTATTTCTTCTATTACTTTCTGTCCTAGCACTTTCCTCATTACCATCTCATTGGATTCTTTTCCAATTTCAATGTTTCCCAGCCATGATTTGTTCACTCATTTCCCTCCTAAACCCACATTTGCCAGAACACCACCTAAGCCATCTCCCTGTTTTCCCAAGCTCATCCTCTTTGCACCATCGAAACCCTAA | 1323 | 47.92 | MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWALLRFLNVAAFRGSFIKSFDVPCISSITFCPSTFLITISLDSFPISMFPSHDLFTHFPPKPTFARTPPKPSPCFPKLILFAPSKP | 440 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2016930 | 2025792 | + | ClG42_10g0017300.10 | Clacu10g0173 | 258797 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g0173 | 440 | MobiDBLite | consensus disorder prediction | 10 | 92 | - | - | |
| Clacu10g0173 | 440 | MobiDBLite | consensus disorder prediction | 118 | 132 | - | - | |
| Clacu10g0173 | 440 | SMART | AT_hook_2 | 143 | 155 | IPR017956 | GO:0003677(InterPro) | |
| Clacu10g0173 | 440 | SMART | AT_hook_2 | 99 | 111 | IPR017956 | GO:0003677(InterPro) | |
| Clacu10g0173 | 440 | MobiDBLite | consensus disorder prediction | 315 | 340 | - | - | |
| Clacu10g0173 | 440 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 169 | 280 | IPR005175 | - | |
| Clacu10g0173 | 440 | MobiDBLite | consensus disorder prediction | 1 | 161 | - | - | |
| Clacu10g0173 | 440 | Gene3D | - | 169 | 295 | - | - | |
| Clacu10g0173 | 440 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 167 | 281 | - | - | |
| Clacu10g0173 | 440 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 47 | 348 | IPR039605 | GO:0003680(InterPro) | |
| Clacu10g0173 | 440 | CDD | DUF296 | 168 | 280 | IPR005175 | - | |
| Clacu10g0173 | 440 | ProSiteProfiles | PPC domain profile profile. | 163 | 302 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu10g0173 | Clacu-Chr10:2016930 | Clacu11g2082 | Clacu-Chr11:31643692 | 1.20E-46 | dispersed | |
| Clacu10g0173 | Clacu-Chr10:2016930 | Clacu10g0174 | Clacu-Chr10:2032372 | 1.60E-11 | tandem | |
| Clacu02g2236 | Clacu-Chr2:35458015 | Clacu10g0173 | Clacu-Chr10:2016930 | 1.50E-18 | transposed | |
| Clacu08g1080 | Clacu-Chr8:20814560 | Clacu10g0173 | Clacu-Chr10:2016930 | 6.30E-62 | transposed | |
| Clacu10g0173 | Clacu-Chr10:2016930 | Clacu05g0296 | Clacu-Chr5:2562919 | 6.70E-13 | wgd | |
| Clacu10g0173 | Clacu-Chr10:2016930 | Clacu09g1218 | Clacu-Chr9:12256965 | 8.00E-75 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g0173 | - | - | - | 0.0 |