Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0174 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTGAGTGGCAGCGGTAACGTCACCAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACAAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAATAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.69 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2032372 2033136 - ClG42_10g0017400.10 Clacu10g0174 258798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0174 254 Gene3D - 79 208 - -
Clacu10g0174 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 222 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu10g0174 254 MobiDBLite consensus disorder prediction 210 236 - -
Clacu10g0174 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Clacu10g0174 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Clacu10g0174 254 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Clacu10g0174 254 CDD DUF296 80 191 IPR005175 -
Clacu10g0174 254 MobiDBLite consensus disorder prediction 205 236 - -
Clacu10g0174 254 PIRSF ESCAROLA 8 250 IPR014476 GO:0003680(InterPro)
Clacu10g0174 254 MobiDBLite consensus disorder prediction 22 70 - -
Clacu10g0174 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0070 Clacu-Chr6:851304 Clacu10g0174 Clacu-Chr10:2032372 5.80E-78 dispersed
Clacu10g0174 Clacu-Chr10:2032372 Clacu11g0821 Clacu-Chr11:8110685 4.80E-48 dispersed
Clacu10g0173 Clacu-Chr10:2016930 Clacu10g0174 Clacu-Chr10:2032372 1.60E-11 tandem
Clacu10g0174 Clacu-Chr10:2032372 Clacu09g1220 Clacu-Chr9:12287147 1.30E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0174 - - - 0.0