Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0195 ATGAGTCAAAGTTTAGATCATGATTTGAGAAACGATGCGCAACGAGCTATGGTTTGCACTGCTAATGATTTACATGGGTGGAAAGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCGAAACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACAACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCGCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCTGTCCCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAAAAAGAGTTAGAAATATCGAGCCGCAATGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATCGATCACGACACACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGACCAAACCATGCGGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCCTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCCCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCCGAAATTTGGCCATGGAAGTCCTATCCTGGGATGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGTCCTCTCTCTTCTCATCCTCAACATATTTCAAGATTTGAAAGCACTGATCCATACGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTTCCTTCTCACATCAATGGCTCTAAACTACTCCAATGA 1725 44.35 MSQSLDHDLRNDAQRAMVCTANDLHGWKDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHNGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVPNSLKPIKESVASMLHLELENSENENQIQKELEISSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNIDHDTHDRDNISSSEKNKTKPCGVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSHINGSKLLQ 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2312610 2317310 + ClG42_10g0019500.10 Clacu10g0195 258819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0195 574 FunFam Two-component response regulator-like APRR2 33 158 - -
Clacu10g0195 574 FunFam Two-component response regulator 326 389 - -
Clacu10g0195 574 Pfam Myb-like DNA-binding domain 332 382 IPR001005 -
Clacu10g0195 574 PANTHER TRANSCRIPTION ACTIVATOR GLK1 17 566 IPR044825 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)|GO:0045893(PANTHER)
Clacu10g0195 574 MobiDBLite consensus disorder prediction 294 309 - -
Clacu10g0195 574 Gene3D - 326 388 - -
Clacu10g0195 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 386 IPR017930 -
Clacu10g0195 574 MobiDBLite consensus disorder prediction 193 233 - -
Clacu10g0195 574 MobiDBLite consensus disorder prediction 261 321 - -
Clacu10g0195 574 SUPERFAMILY Homeodomain-like 328 387 IPR009057 -
Clacu10g0195 574 NCBIfam myb-like DNA-binding domain, SHAQKYF class 330 385 IPR006447 GO:0003677(InterPro)
Clacu10g0195 574 SUPERFAMILY CheY-like 32 150 IPR011006 -
Clacu10g0195 574 Gene3D - 34 154 - -
Clacu10g0195 574 ProSiteProfiles Response regulatory domain profile. 35 148 IPR001789 GO:0000160(InterPro)
Clacu10g0195 574 MobiDBLite consensus disorder prediction 193 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0195 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0195 Clacu-Chr10:2312610 Clacu11g0484 Clacu-Chr11:4586300 2.60E-17 dispersed
Clacu02g1002 Clacu-Chr2:14575097 Clacu10g0195 Clacu-Chr10:2312610 2.20E-35 transposed
Clacu10g0195 Clacu-Chr10:2312610 Clacu09g1265 Clacu-Chr9:13395901 4.30E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48431 PF00249 Myb_DNA-binding 6.40E-09 CL0123 Clacu TF