Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0202 ATGGTGGAATCGGTTGAGTTACCCAGTCGACTCGGAATTCTTCCCTTTAGAAACAAGGTTCTTTTACCAGGCGCCATTATTCGGATTCGATGTACTTCATCCAGCAGTGTGAAATTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGATGCATCGGCGATAGGCCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCGAGGGTTCAATCTGGAACCTCTGATCCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCGAGTGGAAGAGTGACATATACAGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAACTTAGCACCAGAGGAACATATTATACTGCACGAATATCACCTTCAGAAATGACTAAGGCAGAGATGGAGCAAGTGGAGCAAGATCCAGATTTTGTTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGATTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCGATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGACGATGATGAAGATGATTTGGTTGCCCTGGAAAGGAAGATGCAAAGTGCTGAAATGCCTGCTAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAACCTGGATATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCCGACCTTCCATGGAAAAAGGCTACTGAAGAAAATGAACTAGACTTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTTAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTGAAGCCTGATGCAAGAGGGCCTGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGTATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGGGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCGTTTGACCTTTCAAAGGTCGTCTTTGTGGCCACTGCTAACAGAATGCAACCTATACCGCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCAGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGCGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTGGTTCAAAGATACACCAGAGAGGCTGGTGTACGTAATCTTGAGAGGAATTTGGCTGCATTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGTCCCATTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCAGATCATGAGATACCGAACCCGTTGAGGATAGCCTCTCCATTGGTTGTTGATGAGGCTATGCTCGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGACAGAGAGGCAGCCGAGCGGGTTGTATCACCAGGGATATCTGTTGGATTAGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCTGGGAAGGGAGAATTACATCTCACCGGCCAGCTTGGTGACGTCATTAAAGAATCAGCTCAGATAGCTCTTACCTGGGTCCGAGCGAGGGCAACAGATCTGAAACTGGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCCGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCCTTGGTTTCACTGTTTGGTCAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAAATGACTCTTAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCTGCTCATCGTTATGGGATAAAGAGGGTTATTCTGCCAGAGAGAAATTTGAAAGATTTAGTGGAAGTTCCTTCCGGCGTGCTTGCTAGCATGGAGATATTATTAGCAAAGCGGATGGAAGACGTACTGGAGCAGGCTTTTGAAGGTGGATGTCCATGGAGACTACACTCCAAGTTATGA 2661 45.17 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQGVGSDSGDRSSRVQSGTSDPQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISPSEMTKAEMEQVEQDPDFVSLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQTVPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEIPNPLRIASPLVVDEAMLEKVLGPPRFDDREAAERVVSPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASMEILLAKRMEDVLEQAFEGGCPWRLHSKL 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2369710 2380156 - ClG42_10g0020200.10 Clacu10g0202 258826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0202 886 FunFam Lon protease homolog 303 352 - -
Clacu10g0202 886 Pfam Lon protease (S16) C-terminal proteolytic domain 668 875 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 PIRSF Lon_proteas 1 639 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 PIRSF Lon_proteas 658 877 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Clacu10g0202 886 MobiDBLite consensus disorder prediction 69 99 - -
Clacu10g0202 886 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 873 IPR020568 -
Clacu10g0202 886 FunFam Lon protease homolog 2, peroxisomal 365 543 - -
Clacu10g0202 886 Pfam ATP-dependent protease La (LON) substrate-binding domain 12 254 IPR003111 -
Clacu10g0202 886 FunFam Lon protease homolog 2, peroxisomal 688 879 - -
Clacu10g0202 886 Pfam ATPase family associated with various cellular activities (AAA) 404 541 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu10g0202 886 Gene3D - 2 160 IPR046336 -
Clacu10g0202 886 FunFam Lon protease homolog 2, peroxisomal 172 297 - -
Clacu10g0202 886 MobiDBLite consensus disorder prediction 76 95 - -
Clacu10g0202 886 Pfam Lon protease AAA+ ATPase lid domain 565 617 IPR054594 -
Clacu10g0202 886 CDD RecA-like_Lon 365 546 - -
Clacu10g0202 886 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 6 881 IPR027065 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0005524(InterPro)|GO:0005782(PANTHER)|GO:0006625(PANTHER)|GO:0016485(PANTHER)|GO:0030163(InterPro)
Clacu10g0202 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 619 IPR027417 -
Clacu10g0202 886 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 SMART AAA_5 400 545 IPR003593 GO:0016887(InterPro)
Clacu10g0202 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Clacu10g0202 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Clacu10g0202 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Clacu10g0202 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Clacu10g0202 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Clacu10g0202 886 Gene3D - 162 297 - -
Clacu10g0202 886 SMART lon_5 10 254 IPR003111 -
Clacu10g0202 886 Gene3D - 365 543 IPR027417 -
Clacu10g0202 886 Gene3D - 304 352 - -
Clacu10g0202 886 NCBIfam endopeptidase La 13 874 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu10g0202 886 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252(InterPro)|GO:0006515(InterPro)
Clacu10g0202 886 Gene3D - 693 878 IPR014721 -
Clacu10g0202 886 ProSiteProfiles Lon N-terminal domain profile. 11 256 IPR003111 -
Clacu10g0202 886 Gene3D - 544 682 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0202 K01338 - - csv:101213865 1656.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1543 Clacu-Chr2:28845608 Clacu10g0202 Clacu-Chr10:2369710 1.30E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35