Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0237 | ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCTAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCGGCGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTACCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCTTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGGCGTGGCAAAGTGA | 840 | 57.74 | MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAAAAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVGVAK | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2864190 | 2865029 | - | ClG42_10g0023700.10 | Clacu10g0237 | 258861 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0237 | 279 | MobiDBLite | consensus disorder prediction | 210 | 252 | - | - | |
Clacu10g0237 | 279 | SUPERFAMILY | DNA-binding domain | 145 | 205 | IPR016177 | GO:0003677(InterPro) | |
Clacu10g0237 | 279 | ProSiteProfiles | AP2/ERF domain profile. | 145 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | PANTHER | DNA-BINDING DOMAIN | 129 | 232 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Clacu10g0237 | 279 | SMART | rav1_2 | 145 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | Pfam | AP2 domain | 145 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | FunFam | Ethylene-responsive transcription factor 2 | 144 | 204 | - | - | |
Clacu10g0237 | 279 | MobiDBLite | consensus disorder prediction | 214 | 238 | - | - | |
Clacu10g0237 | 279 | CDD | AP2 | 144 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | Gene3D | AP2/ERF domain | 144 | 206 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | PRINTS | Ethylene responsive element binding protein signature | 146 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0237 | 279 | PRINTS | Ethylene responsive element binding protein signature | 169 | 185 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0011 | Clacu-Chr5:328117 | Clacu10g0237 | Clacu-Chr10:2864190 | 7.80E-25 | dispersed | |
Clacu07g1697 | Clacu-Chr7:31764969 | Clacu10g0237 | Clacu-Chr10:2864190 | 3.10E-36 | dispersed | |
Clacu09g0766 | Clacu-Chr9:6855509 | Clacu10g0237 | Clacu-Chr10:2864190 | 2.40E-23 | dispersed | |
Clacu09g0767 | Clacu-Chr9:6867740 | Clacu10g0237 | Clacu-Chr10:2864190 | 1.10E-19 | dispersed | |
Clacu10g0237 | Clacu-Chr10:2864190 | Clacu10g0490 | Clacu-Chr10:5979048 | 4.00E-19 | dispersed | |
Clacu10g0237 | Clacu-Chr10:2864190 | Clacu10g0238 | Clacu-Chr10:2892685 | 1.70E-25 | tandem | |
Clacu01g0451 | Clacu-Chr1:4496963 | Clacu10g0237 | Clacu-Chr10:2864190 | 3.30E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48435 | PF00847 | AP2 | 1.20E-14 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0237 | K09286 | - | csv:101203663 | 436.032 |