Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0237 ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCTAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCGGCGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTACCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCTTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGGCGTGGCAAAGTGA 840 57.74 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAAAAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVGVAK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2864190 2865029 - ClG42_10g0023700.10 Clacu10g0237 258861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0237 279 MobiDBLite consensus disorder prediction 210 252 - -
Clacu10g0237 279 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677(InterPro)
Clacu10g0237 279 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 PANTHER DNA-BINDING DOMAIN 129 232 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu10g0237 279 SMART rav1_2 145 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 Pfam AP2 domain 145 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 FunFam Ethylene-responsive transcription factor 2 144 204 - -
Clacu10g0237 279 MobiDBLite consensus disorder prediction 214 238 - -
Clacu10g0237 279 CDD AP2 144 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0237 279 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0011 Clacu-Chr5:328117 Clacu10g0237 Clacu-Chr10:2864190 7.80E-25 dispersed
Clacu07g1697 Clacu-Chr7:31764969 Clacu10g0237 Clacu-Chr10:2864190 3.10E-36 dispersed
Clacu09g0766 Clacu-Chr9:6855509 Clacu10g0237 Clacu-Chr10:2864190 2.40E-23 dispersed
Clacu09g0767 Clacu-Chr9:6867740 Clacu10g0237 Clacu-Chr10:2864190 1.10E-19 dispersed
Clacu10g0237 Clacu-Chr10:2864190 Clacu10g0490 Clacu-Chr10:5979048 4.00E-19 dispersed
Clacu10g0237 Clacu-Chr10:2864190 Clacu10g0238 Clacu-Chr10:2892685 1.70E-25 tandem
Clacu01g0451 Clacu-Chr1:4496963 Clacu10g0237 Clacu-Chr10:2864190 3.30E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48435 PF00847 AP2 1.20E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0237 K09286 - csv:101203663 436.032