Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0242 ATGAATGGATTTTATTCGGGGTCGATCGTCATTCCTGTTGATCAATCGCAGCTTCCATCGACTTCTTCTTTTCCGGCTGCCGGGACGGTGGCGACTTCTGTGAGAATTTCGTTATCTGTATTTCTTCCGTCGAGATCTTCTCCGATTTTTCCATTACTGGGGTTTGGTTTAGGAATGAATGTTAGGGGCTTTTTATTTAAGGCTATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGGGTTATTGTTAGTAATTTCGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCCCGTTTGAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTCTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACAAGGGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCACTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTTATTTGCTATCTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAACTATCAGGATCATCGCATGATCTTATCGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTAGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTGGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGCGTGGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1206 43.78 MNGFYSGSIVIPVDQSQLPSTSSFPAAGTVATSVRISLSVFLPSRSSPIFPLLGFGLGMNVRGFLFKAMYIEELKEGELQSGEEGNSGVIVSNFESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICIAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKELSGSSHDLIAFDDSSVVVVKESDLDGYDQSISQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2931731 2936314 - ClG42_10g0024200.10 Clacu10g0242 258866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0242 401 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 204 272 IPR000387 GO:0016311(InterPro)
Clacu10g0242 401 FunFam Dual specificity phosphatase domain protein 136 283 - -
Clacu10g0242 401 SMART dsp_5 139 280 IPR020422 GO:0006470(InterPro)
Clacu10g0242 401 ProSiteProfiles Dual specificity protein phosphatase domain profile. 136 283 IPR020422 GO:0006470(InterPro)
Clacu10g0242 401 Pfam Dual specificity phosphatase, catalytic domain 176 278 IPR000340 GO:0016311(InterPro)
Clacu10g0242 401 Gene3D Protein tyrosine phosphatase superfamily 136 286 IPR029021 -
Clacu10g0242 401 ProSitePatterns Tyrosine specific protein phosphatases active site. 225 235 IPR016130 GO:0016311(InterPro)
Clacu10g0242 401 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 69 356 - -
Clacu10g0242 401 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 130 282 IPR029021 -
Clacu10g0242 401 CDD PTPMT1 136 278 IPR044596 GO:0004721(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0242 Clacu-Chr10:2931731 Clacu11g0342 Clacu-Chr11:3096052 1.20E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0242 - - - 0.0