Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0244 ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTAGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 837 51.02 MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHARPIHINPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2951263 2952847 - ClG42_10g0024400.10 Clacu10g0244 258868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0244 278 FunFam Homeobox-leucine zipper protein 18 101 175 - -
Clacu10g0244 278 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
Clacu10g0244 278 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677(InterPro)
Clacu10g0244 278 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677(InterPro)
Clacu10g0244 278 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Clacu10g0244 278 Coils Coil 169 206 - -
Clacu10g0244 278 CDD homeodomain 114 171 IPR001356 GO:0003677(InterPro)
Clacu10g0244 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 2 246 IPR050762 -
Clacu10g0244 278 MobiDBLite consensus disorder prediction 30 44 - -
Clacu10g0244 278 Pfam HD-ZIP protein N terminus 2 88 IPR006712 GO:0005634(InterPro)
Clacu10g0244 278 MobiDBLite consensus disorder prediction 85 116 - -
Clacu10g0244 278 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0244 278 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Clacu10g0244 278 MobiDBLite consensus disorder prediction 30 116 - -
Clacu10g0244 278 MobiDBLite consensus disorder prediction 65 84 - -
Clacu10g0244 278 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Clacu10g0244 278 Gene3D - 118 168 - -
Clacu10g0244 278 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu10g0244 278 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0040 Clacu-Chr5:692457 Clacu10g0244 Clacu-Chr10:2951263 2.00E-74 dispersed
Clacu09g1169 Clacu-Chr9:11397695 Clacu10g0244 Clacu-Chr10:2951263 5.30E-08 dispersed
Clacu10g0244 Clacu-Chr10:2951263 Clacu10g1746 Clacu-Chr10:31003534 3.30E-50 dispersed
Clacu10g0244 Clacu-Chr10:2951263 Clacu09g0379 Clacu-Chr9:3340058 1.30E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48437 PF04618 HD-ZIP_N 1.00E-20 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0244 K09338 - csv:101223208 464.151