Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0247 | ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCGCCACCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG | 672 | 46.43 | MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSDCFAYRGSLL | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3029928 | 3030599 | + | ClG42_10g0024700.10 | Clacu10g0247 | 258871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0247 | 223 | CDD | AP2 | 45 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 184 | IPR051032 | - | |
Clacu10g0247 | 223 | SUPERFAMILY | DNA-binding domain | 44 | 102 | IPR016177 | GO:0003677(InterPro) | |
Clacu10g0247 | 223 | FunFam | Ethylene-responsive transcription factor 2 | 43 | 102 | - | - | |
Clacu10g0247 | 223 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Clacu10g0247 | 223 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Clacu10g0247 | 223 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | Gene3D | AP2/ERF domain | 44 | 102 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0247 | 223 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g0246 | Clacu-Chr6:2891275 | Clacu10g0247 | Clacu-Chr10:3029928 | 3.90E-34 | dispersed | |
Clacu08g0107 | Clacu-Chr8:2145595 | Clacu10g0247 | Clacu-Chr10:3029928 | 3.40E-27 | dispersed | |
Clacu08g0188 | Clacu-Chr8:3808642 | Clacu10g0247 | Clacu-Chr10:3029928 | 4.80E-22 | dispersed | |
Clacu10g0247 | Clacu-Chr10:3029928 | Clacu11g1698 | Clacu-Chr11:28226066 | 7.50E-37 | dispersed | |
Clacu10g0247 | Clacu-Chr10:3029928 | Clacu11g0366 | Clacu-Chr11:3329865 | 1.20E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48439 | PF00847 | AP2 | 4.90E-13 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0247 | - | - | - | 0.0 |