Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0247 ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCGCCACCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 672 46.43 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSDCFAYRGSLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3029928 3030599 + ClG42_10g0024700.10 Clacu10g0247 258871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0247 223 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Clacu10g0247 223 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Clacu10g0247 223 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Clacu10g0247 223 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 MobiDBLite consensus disorder prediction 1 43 - -
Clacu10g0247 223 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 MobiDBLite consensus disorder prediction 25 43 - -
Clacu10g0247 223 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0247 223 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0246 Clacu-Chr6:2891275 Clacu10g0247 Clacu-Chr10:3029928 3.90E-34 dispersed
Clacu08g0107 Clacu-Chr8:2145595 Clacu10g0247 Clacu-Chr10:3029928 3.40E-27 dispersed
Clacu08g0188 Clacu-Chr8:3808642 Clacu10g0247 Clacu-Chr10:3029928 4.80E-22 dispersed
Clacu10g0247 Clacu-Chr10:3029928 Clacu11g1698 Clacu-Chr11:28226066 7.50E-37 dispersed
Clacu10g0247 Clacu-Chr10:3029928 Clacu11g0366 Clacu-Chr11:3329865 1.20E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48439 PF00847 AP2 4.90E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0247 - - - 0.0