Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0256 ATGGAAGATTTTGCAATAATGAGTGGGTTGGTTGGAGTGCAATTTGTATATGCTGGCAACTCTGTTTTTATGAGCTTTCTTATGTCTTTGGGAATTCATCCTTCAACTCTTGTCATCTTCTCTACATTCTCCACTTTTCTCATTGTCTCTCCCATTGCTATTTATTTTGAAAGATATAACTGGCCAAAGAAACTTAGTCTAAAGTTGATTCTTCAGCTTCTTCTCATATCTTTTGGAGGGGTAACATTGTTTCAGTCCCTTTTTCTGAAAGGAATACAGCTAACATCGCCGACTTTAGCAACGGCGATGCCGAATCTCGCCCCGGGACTCATCTTTGCCATTGCTTGGATCTTTAGATTAGAAAAAGTTCAGCTAAGTTGCATCTATAGCAAGATCAAGATTTTAGGTACATTTCTATGTGTGGTTGGCGCCTTCACCATGAGCATAATGCACACAGTGTCATCGGATGCAGCTGCAAAAGACAATATCCCACGAGAATCACCTCCGACCGAGCAAGTGTTCGATGAACAGAAGATCCTCGGTTGTGTGTATCTCTTCTCAGCGATCGTCGTTTTATCTAGCATAGTTGTTTTGCAGGCATCGACACTAGGGGATTTCCCAGCACCGATGTCGTTGTGTGCAATAACGTCTCTCATTGGAGTGCTATTAACCATAGGTGTACAGATAGTTGAATATCAGAAACTGGACATTGGTTGGCCACTTCTCAGTGTTAAGGAATTGGTTGCCTATTTTGTTGTAGGCGGAAGCATTAGCGGCGCTTGTGTGAGCTTCAACGGGTGGGCAATGAAGAAACGAGGGCCAGTTTTGGTGTCGATGTTTAGTCCGATCGGAACCGTTTGCTCACTCATTCTCTCAATTTTCACCTTGGGAGAATCCATCAACATTGGGAGCCTTGCTGGTATGTTCCTCATGTTCACCGGCCTCTACTTCGTCCTATGGGCGAAAGCGAAGGAGCGTTACGCCAACCGAAACCGTCCCGAGAAAACTTGA 1011 44.21 MEDFAIMSGLVGVQFVYAGNSVFMSFLMSLGIHPSTLVIFSTFSTFLIVSPIAIYFERYNWPKKLSLKLILQLLLISFGGVTLFQSLFLKGIQLTSPTLATAMPNLAPGLIFAIAWIFRLEKVQLSCIYSKIKILGTFLCVVGAFTMSIMHTVSSDAAAKDNIPRESPPTEQVFDEQKILGCVYLFSAIVVLSSIVVLQASTLGDFPAPMSLCAITSLIGVLLTIGVQIVEYQKLDIGWPLLSVKELVAYFVVGGSISGACVSFNGWAMKKRGPVLVSMFSPIGTVCSLILSIFTLGESINIGSLAGMFLMFTGLYFVLWAKAKERYANRNRPEKT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3128918 3131025 + ClG42_10g0025600.10 Clacu10g0256 258880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0256 336 PANTHER WAT1-RELATED PROTEIN 11 326 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu10g0256 336 Pfam EamA-like transporter family 180 319 IPR000620 GO:0016020(InterPro)
Clacu10g0256 336 Pfam EamA-like transporter family 10 148 IPR000620 GO:0016020(InterPro)
Clacu10g0256 336 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 148 - -
Clacu10g0256 336 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0256 Clacu-Chr10:3128918 Clacu10g1434 Clacu-Chr10:27482274 2.10E-19 dispersed
Clacu01g0420 Clacu-Chr1:4255165 Clacu10g0256 Clacu-Chr10:3128918 4.50E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0256 - - - 0.0