Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0268 ATGAGGGGTATTTCCTTTCACTTTCAGGGGAAGGGGGAGTTGGAATTTTCAGCCGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACAAGAACTAGAAGAAGAACAAGAAGAAGGGCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACTCCTGCTGTTGAACCGGTCGCCGGAACTGGTGTTGGGAACGCCATTTTCCCAGGTGGATTGGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACAGTCGTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGGAGTAAAAGTGTTTTGCACAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATGGTCGATCAGGGTTCCGAATTCGACACCGGTGCTGGTAATGTTCTCGCCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGTTAACAATAAGTCTCTTAGTAGAAGCACTTGTGGGGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTTGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGTTCTCTTGAAAATCTTCTTGTTCCTGTTTCTGGGATGATTTATCCTCAGCAACTTCAGCCATTTGAGAGTCCTGATGAGAAACCTCAGAATTTGAATACTCACGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGTTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGGACTCGACCCCAACCCAAACGGGCAGATCCCGAAGGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAAGTGTTGCAACAGCAGCAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCAAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATCACAATCCCCCACAGCAACAGCATCAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTTTGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCATTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCCGAAATCTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTCGAGGCCCTCGATGACGTTGATCGAATTCACATTGTAGATTTCGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACTGTCACTCAAAATCACTGCTTTTGCCTCTCCCTCCACTCACCATCCAATTGAACTCGGGCTTATGCGTGAAAATCTTACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTCCATTGCCATTTCCTCGAGCAAGCGAAAATGAGGCTATTGCAGTAAACTTCCCTTTATGGTGCTCATCAAATCAGCCAGCGATGCTTCCGTCTCTCCTCCGTTTCATCAAGCAACTCTCACCGAAAATTGTGGTCTCACTGGACCGAGGGTGCGATCGAAGTGACCTTCCATTTCCTCAGCATATGCTTCAGGCCCTTCAGTCCTATATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCCGTGAACAAGATTGAGAGGTTTCTTTTGCAACCCAGAATTGAAAGCACCGTCCTGGGACGGCTTCGAGCACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTATGCTGGCAGCGCCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGTTGA 2343 47.55 MRGISFHFQGKGELEFSAAFSSSSPICSGFAEKWVKKGEEQQEQEQELEEEQEEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGCVPSLPPETPAVEPVAGTGVGNAIFPGGLERCGVGLEDLESMWSETAGPEQSFLRWIAGDVVEDPSLGSKSVLHNGNIPFDLDGNAGIGMVDQGSEFDTGAGNVLANINPNLSFPLAACAGFSDVNVNNKSLSRSTCGGVVNYKSSSLGLNNRHGNFNVQNPIFTGSLENLLVPVSGMIYPQQLQPFESPDEKPQNLNTHVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGLDPNPNGQIPKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMAYHNPPQQQHQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLLNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGALSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFPLPFPRASENEAIAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3322667 3325009 - ClG42_10g0026800.10 Clacu10g0268 258892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0268 780 ProSiteProfiles GRAS family profile. 408 779 IPR005202 -
Clacu10g0268 780 MobiDBLite consensus disorder prediction 70 99 - -
Clacu10g0268 780 Coils Coil 31 51 - -
Clacu10g0268 780 Pfam GRAS domain family 418 779 IPR005202 -
Clacu10g0268 780 MobiDBLite consensus disorder prediction 70 89 - -
Clacu10g0268 780 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 400 778 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0300 Clacu-Chr6:3713774 Clacu10g0268 Clacu-Chr10:3322667 5.60E-137 dispersed
Clacu07g0901 Clacu-Chr7:22654560 Clacu10g0268 Clacu-Chr10:3322667 5.90E-59 dispersed
Clacu10g0268 Clacu-Chr10:3322667 Clacu11g1100 Clacu-Chr11:13857617 8.70E-40 dispersed
Clacu10g0268 Clacu-Chr10:3322667 Clacu07g0900 Clacu-Chr7:22596275 2.20E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48441 PF03514 GRAS 4.30E-93 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0268 K27747 - csv:101218630 1353.58