Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0292 ATGTTAGCTCCTCCGAGTTTCCTCCCCTCACCCCAACTATCCACCATGCAACACTCCCCCAATTCCCAATCCCAACCCCCAACTTCCCGCCGCGTCGCAGTGATCGGCGCCGGTGCCGGCGGCCTCGTCACTGCCCGTGAGCTCCGCCGCGAGGGCCACCGTGTAGTCGTTTTTGAACGGAATAATCAAATTGGAGGGACCTGGGTATATTCCCCGGAAATTGAATCCGACCCACTTGGAATCGACCCAAATCGGACCCGTGTCCATAGCAGTCTCTACAAATCTCTACGAACCAATCTCCCCAGAGAACTGATGGGGGTCCGTGATTATCCGTTTGTGCCTCGAGAAGGGAAGGATCGGGATCCGAGGCGATTTCCTAGTCACCGAGAGGTTTTAAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATTTGTGAATTGGTGAGGTTTGGAACTGAGGTTGTTTTTGTTGGTTTGGAGGAGCTTGAGAAATGGAGGGTTGAATTTAGATGTGAAAATGGTGCTGTTGATGATGAAATTTTTGATGCTGTAGTTGTTAGTGTTGGGAATTATTCGCAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGGATGGCCTGGGGAGCAAATACATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTGTCTTGATAGGTTATTCGTCAAGTGGTACAGACATTTCTCAGGAGCTCACTGGGGTTGCCAAAGAAATACATATTGCTTGGAGATCAGCTAAAACAGAGCTTTTCGACACAGAATCAACTATTTGTAACGTGTCATTTCATCCAATGATCGAAAGTGTCTGTAAAGATGGGACAGTGGTCTTTCAAGATGGTTGTGTCATTTCGGCTGATGTTATTTTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAATGGCATTGTTACGGTGGACGACAACCGTGTAGGACCTCTGTACAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTTGTTGGGTTACCATTTAAGGTTGTTCCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGCTGGCAGATGTTAAAGACTTTTATGCAGATCTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTAGGTGATTATATGCCTGCCTACTTAGATTGGCTTGCAGCAACATGTGGTTGTCCTGCATATGAAGAATGGAGAAAGGAAATGTACATTGCTACTCATATTTATAAAAAGGCCAATCTCGAGACGTATCGCGATGATTGGCACGACGATGAGTTGATTCGCCAAGCTTACAAGGAATTTAGCAACAAAAAGGATTCCCTTTTTCAATCGGAAGCTTTTCCTCTACGAAGAGCAAATCCATGTTATAGCCAATTAGGTACCCTCCACTTCCTTCCCTCACCTCAACCAACTACGATGCAACACTCCCGGCGCGTGGCAGTGGTCGGTGCCGGCGCCGGTGGGCTTGTCTCGGCCCGGGAACTTTCCCGCGAGGGCCACCAAGTGGTCGTTTTCGAACGGAATACTCAAATCGGAGGGACCTGGGTATATTCACCGGAAATTGAATCCGACCCACTTGGAATCGACCCGAATCGGACCCGAATCCATAGCAGCCTCTTCAATTCTCTACGCACCAATATTCCAAGAGAACTCATGGGGGTCCGCGATTACCCGTTTGTTCCTCGAGAAGGGGAGGATCGAGATCAGAGGCGATTTCCAAGTCATCGAGAGGTCTTAAAGTATTTGGAAGATTTCGCAAATGAATTTGGGATTTGTAAATTGGTGAGGTTTGGAACTGAAGTTGTGTTTGTTGGTTTGGAGGAGGAGCTTGGGAAATGGAGGGTTGAATTTAGATTTGAAAATGGGGTTGTTGATTATGACATTTTTGATGCTGTGGTTGTTTGGATTGATGGATGGCCTGGGGAGCAAGTGCATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTGTCGTGATAGGTTATTCTGCAAGCGGTACGGACATTTCTCAGGAGCTCATTGGGATTGCCAAAGAAATTCATATTGCTTGGAGATCAGCTAAAACAAAGCTTTTGGACACAGAACCAATTATTAGTAATGTGTCATTTCATCCAAATATCGAAAGTGTCCGTAAAGATGGGACAGTGGTTTTTCAAGACGGGTGCATCATTTTGGCTGATGTTATTCTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAATGGGATTGTTACGGTGGAGGACAACCGTATAGGACCTCTGTACAAGCATGTCTTCCCCCCAGCATTAGCCCCAGGGCTTTCCTTTGTTGGGTTACCATTTAAGGCTGTTCCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGCTGGCAGATGTTAAAGCCTTTTATGCAGATCTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTGGGTAGTGATAATATGCCTGCCTACTGTAACTGGCTTGCAACAACTTGTGGTTGTCCTGCCTATGAAGAATGGAGAAAGGAAATGTTCAATGCTACTGATATAAATAGAAGGGCCAATCTCGGGTCATATCGTGATGATTGGCATGACGATGACTTGATTCATCAAGCTTATGAGGAATTTAGCAACCAATTAGGAACTCAACCCAACGACAATGCGACACTCCAGAAGCGTGGCAGTGATCGGCGCCGGTGCCGGTGGCCTCGTCTCGGCCCGGGAACTTTCCCGCGAGGGCCACCACGTGGTCGTATTCGAACTGAATACTCAAATTGGAGGGACCGGAAATTGAATCCGACCCACTTGGAATCGACCCGAATCCATAGCAGCCTCTTCAATTCTCTACGCACCAATATTCCAAGAGAACTCATGGGGGTCCGCGATTACCCGTTTGTTCCTCGAGAAGGGGAGGATCGAGATCAGAGGCGATTTCCAAGTCATCGAGAGGTCTTAAAGTATTTGGAAGATTTCGCAAATGAATTTGGGATTTGTAAATTGGTGAGGTTTGGAACTGAAGTTGTGTTTGTTGGTTTGGAGGAGGAGCTTGGGAAATGGAGGGTTGAATTTAGATTTGAAAATGGGGTTGTTGATTATGACATTTTTGATGCTGTGGTTGTTTGTGTTGGGAATTATTCGCAGCCTCGAGTTGCAGAGATTCATGGGATTGATGGATGGCCTGGGGAGCAACTACATAGTCACAATTATCGTGATCCCGAACCGTTTCGGGGTAAGGTTGTTGTGTTGATAGGCTATTCTTCAAGTGGTACGGACATTTCTCAAGAGCTCATTGAGGTTGCCAAAGAAATTCATATTGCTCGGAAATCAGCTAGAACAACAAAGCTTTTGGACACAGAATCAATTATTAATAATGTGTCATTTCATCCAATGGTCGAAAGTGTCCGTAAAGATGGGACGGTGGTCTTTCAAGACGGGTGCGTCGTTTCGGCTGATATTATTCTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAACGGCATCGTTACGGTGGACGATAATCGTGTAGGACCACTGTATAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTTATTGGGTTACCATTTAAGGCAAGTATCCAAAATTGTGGTACGAACTTTGAATTTGGTTTATGGTTACAACAAATTCTTGTGCTACAATTTGTAATGCAGGTTGTTTCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCGAACAGGATTGCACTTCCATCGAAAGAGGAAATGTTGGCAGATGTTAATGCTTTTTATGAAGAACTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTGGGTAGTAATAATACGCCTGCCTACTGTAACTGGCTTGCAGCAACTTGTGGTCGTCCTGCCTATGAAGAATGGAGAAAGGAAATGTTCATTGCTACTAATATTAATAAAAGGGCCAATCTCGGGTCTTACCGTGATGATTGGCACGACGATGAGTTGATTCGTCAAGCTTATGAGGAATTTAACAATGGAGCCATTGCAGTTGCAGGCTTTGTCTGTTTGGAATATCTTGATGCATTCTTCCCAAGTTAG 4242 45.5 MLAPPSFLPSPQLSTMQHSPNSQSQPPTSRRVAVIGAGAGGLVTARELRREGHRVVVFERNNQIGGTWVYSPEIESDPLGIDPNRTRVHSSLYKSLRTNLPRELMGVRDYPFVPREGKDRDPRRFPSHREVLKYLEDFANEFGICELVRFGTEVVFVGLEELEKWRVEFRCENGAVDDEIFDAVVVSVGNYSQPRVAEIPGIDGWPGEQIHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELTGVAKEIHIAWRSAKTELFDTESTICNVSFHPMIESVCKDGTVVFQDGCVISADVILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFVGLPFKVVPFPMFELQSNWVAGVLSNRIALPSKEEMLADVKDFYADLEAFGKPKHRTHELGDYMPAYLDWLAATCGCPAYEEWRKEMYIATHIYKKANLETYRDDWHDDELIRQAYKEFSNKKDSLFQSEAFPLRRANPCYSQLGTLHFLPSPQPTTMQHSRRVAVVGAGAGGLVSARELSREGHQVVVFERNTQIGGTWVYSPEIESDPLGIDPNRTRIHSSLFNSLRTNIPRELMGVRDYPFVPREGEDRDQRRFPSHREVLKYLEDFANEFGICKLVRFGTEVVFVGLEEELGKWRVEFRFENGVVDYDIFDAVVVWIDGWPGEQVHSHNYRDPEPFRGKVVVVIGYSASGTDISQELIGIAKEIHIAWRSAKTKLLDTEPIISNVSFHPNIESVRKDGTVVFQDGCIILADVILHCTGYKYHFPFLETNGIVTVEDNRIGPLYKHVFPPALAPGLSFVGLPFKAVPFPMFELQSNWVAGVLSNRIALPSKEEMLADVKAFYADLEAFGKPKHRTHELGSDNMPAYCNWLATTCGCPAYEEWRKEMFNATDINRRANLGSYRDDWHDDDLIHQAYEEFSNQLGTQPNDNATLQKRGSDRRRCRWPRLGPGTFPRGPPRGRIRTEYSNWRDRKLNPTHLESTRIHSSLFNSLRTNIPRELMGVRDYPFVPREGEDRDQRRFPSHREVLKYLEDFANEFGICKLVRFGTEVVFVGLEEELGKWRVEFRFENGVVDYDIFDAVVVCVGNYSQPRVAEIHGIDGWPGEQLHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELIEVAKEIHIARKSARTTKLLDTESIINNVSFHPMVESVRKDGTVVFQDGCVVSADIILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFIGLPFKASIQNCGTNFEFGLWLQQILVLQFVMQVVSFPMFELQSNWVAGVLSNRIALPSKEEMLADVNAFYEELEAFGKPKHRTHELGSNNTPAYCNWLAATCGRPAYEEWRKEMFIATNINKRANLGSYRDDWHDDELIRQAYEEFNNGAIAVAGFVCLEYLDAFFPS 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3806674 3825998 + ClG42_10g0029200.10 Clacu10g0292 258916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 276 452 IPR036188 -
Clacu10g0292 1413 Gene3D - 970 1101 IPR036188 -
Clacu10g0292 1413 Gene3D - 749 932 IPR036188 -
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 210 224 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 353 366 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 237 252 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 288 315 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 54 78 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 PRINTS Flavin-containing monooxygenase (FMO) signature 30 46 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 987 1152 IPR036188 -
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 270 418 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 727 846 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 504 716 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 30 255 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 989 1155 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 Pfam Flavin-binding monooxygenase-like 1168 1321 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Clacu10g0292 1413 MobiDBLite consensus disorder prediction 1 29 - -
Clacu10g0292 1413 FunFam Flavin-containing monooxygenase 660 762 - -
Clacu10g0292 1413 Gene3D - 502 663 IPR036188 -
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 26 255 IPR036188 -
Clacu10g0292 1413 FunFam Flavin-containing monooxygenase 1099 1203 - -
Clacu10g0292 1413 MobiDBLite consensus disorder prediction 926 964 - -
Clacu10g0292 1413 MobiDBLite consensus disorder prediction 8 29 - -
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 736 912 IPR036188 -
Clacu10g0292 1413 Gene3D - 1102 1203 IPR036188 -
Clacu10g0292 1413 Gene3D - 31 448 IPR036188 -
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 1173 1381 IPR036188 -
Clacu10g0292 1413 Gene3D - 664 748 IPR036188 -
Clacu10g0292 1413 Gene3D - 1267 1393 IPR036188 -
Clacu10g0292 1413 SUPERFAMILY FAD/NAD(P)-binding domain 502 716 IPR036188 -
Clacu10g0292 1413 PANTHER DIMETHYLANILINE MONOOXYGENASE 29 463 IPR050346 -
Clacu10g0292 1413 FunFam Flavin-containing monooxygenase 198 301 - -
Clacu10g0292 1413 Gene3D - 198 301 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0292 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1261 Clacu-Chr4:26715113 Clacu10g0292 Clacu-Chr10:3806674 4.60E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g506 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00282 Cam10g0292 Cec10g0300 Cco10g0296 Clacu10g0292 Cmu10g1131 Cre10g0539 . . . . Lsi07g01322 . . Cme06g02606 . . . . . . . . . . . . . . . Cpe08g00751 . . . . . . . . . . . . . . . . Csa03g00301 Chy06g02023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58