Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0295 ATGTCATCTTCTTCGATTCCTAACACTTTCTCTCAAGTTCCTCCTCCTCTTCTTCCTCCTCCTTCTTCCGAGCAGCTTTGCTATGTCCATTGTAACATTTGCGACACCGTTTTAGCGGTGAGTGTTCCTTGTAGTAGTTTGTTCAAAAGGGTCACCGTTCGTTGTGGCTATTGCGCCAATCTTCTGCCGGTGAACATGTGTGGTGGCATGCTTCTCCCTTCTTCAAATCAGTTTCATGGCTTTGCTCACTCAACCCCTAACTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATTCAAATCCAAATCCAAATCCAAATTTTCTGATGAACCAAGCAGAAGGAATTGATTTAACCATGGCCACTCGTGTAGCTAATGATCTTCCAAGGCAGCCTCCAAGCATAAATAGACCTCCAGAAAAGAGACAAAGGGTGCCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGGATTAAGGCTGCCAATCCAGACATATCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTTCTTCTTCCTGA 588 44.73 MSSSSIPNTFSQVPPPLLPPPSSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGMLLPSSNQFHGFAHSTPNFLSPNTHNFLEEISNSNPNPNPNFLMNQAEGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGSSS 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3849611 3853716 - ClG42_10g0029500.10 Clacu10g0295 258919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0295 195 MobiDBLite consensus disorder prediction 130 149 - -
Clacu10g0295 195 FunFam axial regulator YABBY 5-like 131 189 - -
Clacu10g0295 195 CDD HMG-box_SF 147 183 - -
Clacu10g0295 195 PANTHER PROTEIN YABBY 6-RELATED 23 194 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Clacu10g0295 195 SUPERFAMILY HMG-box 133 186 IPR036910 -
Clacu10g0295 195 Gene3D High mobility group box domain 134 188 IPR036910 -
Clacu10g0295 195 Pfam YABBY protein 22 192 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1211 Clacu-Chr6:22794077 Clacu10g0295 Clacu-Chr10:3849611 2.40E-39 dispersed
Clacu10g0295 Clacu-Chr10:3849611 Clacu11g0446 Clacu-Chr11:4204253 3.10E-39 dispersed
Clacu01g0387 Clacu-Chr1:3915633 Clacu10g0295 Clacu-Chr10:3849611 1.60E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48442 PF04690 YABBY 3.40E-69 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0295 K25796 - csv:101219601 338.961