Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0304 ATGCACTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGCGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATCGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATGTTTTGAAGGAGGCCAGGTTGAGATGTCTGAGGACAGTTGTTGTAGGGGATCTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1236 43.85 MHCILTRRPTKPRHRSPPETPAVKRLPADSSATRSCILEKEILAMITLVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDVLKEARLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3932848 3934139 - ClG42_10g0030400.10 Clacu10g0304 258928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0304 411 Gene3D - 77 323 - -
Clacu10g0304 411 SUPERFAMILY beta-beta-alpha zinc fingers 162 188 IPR036236 -
Clacu10g0304 411 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Clacu10g0304 411 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 75 403 - -
Clacu10g0304 411 MobiDBLite consensus disorder prediction 1 27 - -
Clacu10g0304 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Clacu10g0304 411 CDD PIN_LabA-like 173 304 - -
Clacu10g0304 411 Pfam NYN domain 235 315 IPR021139 GO:0004540(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2208 Clacu-Chr5:30651986 Clacu10g0304 Clacu-Chr10:3932848 1.50E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48444 PF01936 NYN 7.00E-10 CL0280 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0304 - - - 0.0