Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0324 ATGAGAAGGGTTCATCGGCTTTGTCTTTCTCATGCTCTTCTATTTTTAATTCTATTTCTCGTCGGATTTTGCTCTGCCGTCACTGAGAATGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTTGCCGGCGAGGATCATTGCCGGAGTTTCAACGGCGTGTTCTGTAACTCCGATGGGTTCGTGGAGAGGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCACCTTCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGCAATATTCCGATTGAATATGGCGCCATTGTTACACTGTGGAAGTTGAACTTGAGCTCCAATGCTTTTTCGGGTTCGGTTCCGGAGTTCATTGGCAATTTGCCGAGCATTCGGTTTCTGGATTTGTCGAGAAATGGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTAGGATACCTTCAACAATTTTGAACTGTTTGAGCCTCGAAGGCTTTGATTTCTCAAACAATGTTCTAAGTGGGAGCATTCCCTTGAAACTTTGTGATATTCAAAGATTAGAGTATGTATCTGTGAGAAGCAATGCATTGTCTGGGAATATCCAAGGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGGTCACCGCCGTTCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTTGTGGGTTGTAGCAATAATCTAGAAGTTCTTGATGTTTCAGGAAATGGTTTGGATGGAGAGATCCCATTGAGCATTACAAAGTGTGGAAGTCTTAAAATCTTAGATTTTGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGAACTTGCAGATTTGAAAAAGCTTTTGGTGCTTCGGTTGGGTTATAACTCGATCACCGGGACGATTCCAGCCATTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTTCACAATCTCAATCTTGTTGGTGAGATTCCTGATGACATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATGTTTCTGGTAATGCATTGGAAGGGGAGATTCCTCAATCTCTTTACAACATGACATACCTTGAAATTCTTGATCTACACAATAATCATCTGAATGGAAGCATTCCATCCACACTTGGGAGCCTCTCGAAACTACAGTTTCTGGATCTAGCTCAAAACCGGCTATCCGGTTCGATACCACCTACTCTTGAAAATCTCACATTACTGCACCATTTCAATGTCTCTTTCAATAACCTTTCAGGCGCCATACCTCCCATTAATACGATCCAAAATTTTGGGCCTTCTGCATTCTCAAACAATCCTTTTCTTTGTGGTGCTCCCCTGGATCCTTGCTCTGCTGGTAGCATCCCTGGCACGACTTCCATATCAAAGAAACCGAAGGTTCTTAGTCTATCTGCAATCATTGCAATCGTAGCAGCGGTTGTGATCCTAGTCGGGGTTTGCGTGATCTCCATTTTGAACCTAATGGCTCGGACGAGGAAGGCAAAGAGCACCGAAGTCATTGAGAGTACACCGCTCGGTTCAACCGATTCAGGTGTCATAATTGGGAAACTGGTTCTTTTCAGCAAAACTTTGCCATCCAAGTATGAAGACTGGGAGGTTGGCACCAAAGCTTTGCTCGACAAGGAATGCCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAGGACAACTTTTGAGGGCGGCATCTCCATTGCCGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTCGAGACTGAAATCGGACGTTTGGGAAACATCAAACACCCAAACTTAGTTGCTTTCCAGGGGTACTATTGGTCGTCATCAATGCAGTTGATTCTATCCGAATTCGTCGCAAATGGCAATTTATACGACAATCTACACAGTCTGAATTATCCAGGCACCAGCACAGGCATTGGCAATACGGAGTTACATTGGTCTAGAAGATATAACATTGCAATTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATACTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGAAGCCAAGTTATCCGATTACGGGCTGGGGAAGTTGCTTCCAGTTTTGGACAATTATATCTTAACAAAATACCATAGCGCCGTAGGGTACGTTGCACCAGAGTTAGCACAAAGTTTGAGAGCTAGTGAAAAATGCGATGTGTATAGTTTTGGAGTGATTCTACTGGAGTTGGTAACCGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTTGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTTGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTGATCCAAGTGATGAAATTGGGATTGATTTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATACGAAACGGATTAGGATCATAG 2649 43.41 MRRVHRLCLSHALLFLILFLVGFCSAVTENDILLQFKDAVTEDPFDFLRTWVAGEDHCRSFNGVFCNSDGFVERIVLWNSSLAGTLSPSLSGLKFLRTLTLYGNRFTGNIPIEYGAIVTLWKLNLSSNAFSGSVPEFIGNLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGRIPSTILNCLSLEGFDFSNNVLSGSIPLKLCDIQRLEYVSVRSNALSGNIQGQFSACQSLKLVDLSSNLFTGSPPFEVLGFKNITYFNVSYNRFSGGIAEVVGCSNNLEVLDVSGNGLDGEIPLSITKCGSLKILDFESNKLVGKIPAELADLKKLLVLRLGYNSITGTIPAIFGNIELLQVLNFHNLNLVGEIPDDITSCRFLLELDVSGNALEGEIPQSLYNMTYLEILDLHNNHLNGSIPSTLGSLSKLQFLDLAQNRLSGSIPPTLENLTLLHHFNVSFNNLSGAIPPINTIQNFGPSAFSNNPFLCGAPLDPCSAGSIPGTTSISKKPKVLSLSAIIAIVAAVVILVGVCVISILNLMARTRKAKSTEVIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEVGTKALLDKECLIGGGSIGTVYRTTFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVANGNLYDNLHSLNYPGTSTGIGNTELHWSRRYNIAIGTARALAYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHSAVGYVAPELAQSLRASEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4191880 4194635 + ClG42_10g0032400.10 Clacu10g0324 258948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0324 882 CDD STKc_IRAK 601 876 - -
Clacu10g0324 882 Gene3D Ribonuclease Inhibitor 282 380 IPR032675 -
Clacu10g0324 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Clacu10g0324 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0324 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 165 - -
Clacu10g0324 882 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 166 502 - -
Clacu10g0324 882 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 337 357 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Clacu10g0324 882 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Clacu10g0324 882 SUPERFAMILY L domain-like 261 498 - -
Clacu10g0324 882 SMART LRR_typ_2 141 165 IPR003591 -
Clacu10g0324 882 SMART LRR_typ_2 406 429 IPR003591 -
Clacu10g0324 882 SMART LRR_typ_2 430 454 IPR003591 -
Clacu10g0324 882 SMART LRR_typ_2 334 357 IPR003591 -
Clacu10g0324 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 671 - -
Clacu10g0324 882 Pfam Protein tyrosine and serine/threonine kinase 599 873 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0324 882 Gene3D Phosphorylase Kinase; domain 1 573 671 - -
Clacu10g0324 882 Gene3D Ribonuclease Inhibitor 177 281 IPR032675 -
Clacu10g0324 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 672 882 - -
Clacu10g0324 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Clacu10g0324 882 ProSiteProfiles Leucine-rich repeat profile. 432 455 IPR001611 GO:0005515(InterPro)
Clacu10g0324 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
Clacu10g0324 882 SUPERFAMILY L domain-like 29 278 - -
Clacu10g0324 882 PANTHER LEUCINE RICH REPEAT KINASE 2 139 876 IPR051420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0324 Clacu-Chr10:4191880 Clacu10g2240 Clacu-Chr10:35341536 1.10E-83 dispersed
Clacu10g0324 Clacu-Chr10:4191880 Clacu11g0710 Clacu-Chr11:6968293 3.70E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73863 PF00069 Pkinase 5.20E-35 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0324 - - - 0.0