Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0326 ATGGACCAAAAATTACAAACCCCTCTTTCCATTTTTCATGCAAACCCTAATCTCGTTGACATTCACGAAGTAGTTCTAGAAGAGGAGAACGAGGAGAAGGAAGAAGAAGAGCACACTCGGCCAACAATGACATCTGTGTTGGCCGATGCTGTTGAGAAGCGGCCTAAGAAACATAACAACAATAATCGACTACGACCACCACCACCACCACCACTACGAGCAGGGGGTTTCGATCGACAAATGTCGTTGGAAACGGGTTTGAATCGGGTTTCGAAAGGGAAGGGTATTGAGAGAATGGCTCTTCCAAGGAGTGGAAGAAGCTTTGGAGGGTTTGATTCAACCATTATCGAAGGGAAGAAAGCAGATTTTAGTATGTTTAGAACAAAATCAACTCTTAGTAAGCAAAATTCTCTATTGCCATTGAAGAAAGATCATAGAGATCATCAAATGGATCAGTCTCATCAAAGAACTTATGGAAGCTCTGAAGGAATGGATGAATCTGTGAATAAAAGTGTTCCTGTTGGAAGATACTTTGCTGCTCTTAGAGGACCTGAACTTGATCAAGTCAAGGACTACGAAGACATTCTTCTCCCAAAAGACGAAAAATGGCCGTTCCTTCTCCGATTCCCGATTGGATGCTTCGGTATCTGCCTCGGCCTCAGCAGCCAAGCCGTGCTGTGGCGGGCGCTCGCAACGAGCCCCGCCACCAAGTTCCTTCATATTTCCCCATTCATCAACCTTGCCATTTGGGTGTTGGCCACAGCTGCTCTGTGCTCAGTTACAGTGGCTTACATTCTCAAGTGCATCTTTTACTTTGAAGCTGTAAGGAGAGAGTACTTCCACCCTGTTCGTGTTAACTTCTTCTTTGCCCCTTGGGTCGTCTGCATGTTCCTTGCCATCAGCGTCCCGCCGCGGTTCGTGTCGGAGCCGCTTCACCCGGCTGTTTGGTGTGTCTTCATGGGCCCATACTTCTTGCTCGAGCTTAAGATTTACGGGCAATGGTTGTCCGGAGGGAAGCGACGCCTTTGTAAGGTGGTGAACCCGTCATCGCACTTGTCGGTGGTCGGGAACTTCGTCGGGGCGATACTGGCAGCGAAATGTGGGTGGTTGGAGGCAGCAAAGTTCTTATGGTCAGTTGGGTTTGCACATTATTTGGTGGTGTTTGTGACACTTTATCAAAGGCTGCCGACGAGTGAGGCACTGCCGAAGGAGCTACACCCTGTTTACTCAATGTTCATTGCTGCCCCTTCAGCAGCCAGCATTGCTTGGCAGACCATTTATGATGACTTTGATGGCTTGTCAAGAACTTGCTTCTTCATTGCTTTGTTTCTCTACATTTCTCTTGTTGTTAGGATCAACTTCTTCACTGGATTCAGATTTTCAGTAGCTTGGTGGTCTTACACATTTCCAATGACAACAGCTTCAGTGGCAACCATAAAGTATGCAGAGCATGTCCCTACAGTTGTAAGTAAAGGTCTGGCACTTACCCTTTCTTTCATGTCCTCTACCATGGTGTCTCTTCTCTTTGTCTCCACTCTCCTTCATGCTTTTGTTTGGAAGACACTGTTCCCCAATGACCTGGCCATTGCTATCACAAAGAAGAGACTTATCAAGGATAGGAGACCATTCAAAAAGGCTTATGACCTCAAACGCTGGACAAAACAAGCTCTTACCAAACACAACAACAATAAGGATGATGATTTTGATGCACAAAATCAGGCATTTTGA 1728 46.3 MDQKLQTPLSIFHANPNLVDIHEVVLEEENEEKEEEEHTRPTMTSVLADAVEKRPKKHNNNNRLRPPPPPPLRAGGFDRQMSLETGLNRVSKGKGIERMALPRSGRSFGGFDSTIIEGKKADFSMFRTKSTLSKQNSLLPLKKDHRDHQMDQSHQRTYGSSEGMDESVNKSVPVGRYFAALRGPELDQVKDYEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATKFLHISPFINLAIWVLATAALCSVTVAYILKCIFYFEAVRREYFHPVRVNFFFAPWVVCMFLAISVPPRFVSEPLHPAVWCVFMGPYFLLELKIYGQWLSGGKRRLCKVVNPSSHLSVVGNFVGAILAAKCGWLEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQTIYDDFDGLSRTCFFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEHVPTVVSKGLALTLSFMSSTMVSLLFVSTLLHAFVWKTLFPNDLAIAITKKRLIKDRRPFKKAYDLKRWTKQALTKHNNNKDDDFDAQNQAF 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4213520 4218689 - ClG42_10g0032600.10 Clacu10g0326 258950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0326 575 MobiDBLite consensus disorder prediction 145 167 - -
Clacu10g0326 575 PANTHER S-TYPE ANION CHANNEL SLAH3 146 535 IPR030183 GO:0006873(InterPro)|GO:0008308(InterPro)|GO:0016020(InterPro)|GO:0090332(PANTHER)
Clacu10g0326 575 CDD TDT_SLAC1_like 208 512 - -
Clacu10g0326 575 Gene3D - 205 523 IPR038665 -
Clacu10g0326 575 MobiDBLite consensus disorder prediction 27 78 - -
Clacu10g0326 575 Pfam Voltage-dependent anion channel 208 513 IPR004695 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0326 575 Coils Coil 19 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0326 K26672 - - csv:101212660 994.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0081 Clacu-Chr1:711672 Clacu10g0326 Clacu-Chr10:4213520 2.60E-127 dispersed
Clacu05g2029 Clacu-Chr5:29250721 Clacu10g0326 Clacu-Chr10:4213520 4.20E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g448 Blo02g01074 . . . Bpe05g00612 . . . Cmo06g00762 Cmo16g01074 . . . . . Cpe14g00848 . . . . . . . . Cla10g00315 Cam10g0330 Cec10g0343 Cco10g0335 Clacu10g0326 Cmu10g1166 Cre10g0576 . . Cone6ag0727 Cone9ag0733 Lsi07g01364 . . Cme06g02649 . . . . . . Bma05g00792 . . . . Cma06g00740 Cma16g01028 . Car16g00979 Cpe08g00780 . . . . . . . . . . . . . . . . Csa03g00338 Chy06g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008638 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35