Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0339 | ATGGCTTCCCATTTCCCTCGTCGGAGCTTTGTCGCCGTCATCTTCTTCTTGTCGTTTATGATGTCGGAGATGACAATGAAATCGGTGCTCGCCATCTTTCGACCAAGCCCTTGGCAGCTCGCCCATGCCACCTTCTATGGTGATGAGACAGCATCAGAAACAATGGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAATGCCGGTGGATGGTGCAACCCACCGAGGGTTCACTTCGACATGTCAAAGCCAGCCTTCATGAAGATCGCCAACTGGAAGGCCGGGATCATCCCCGTTGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGGTTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTAATGAACGTCGGCGGTGGCGGAGACGTGTCGGGAATGTGGGTGAAAGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCGACCTACAATGCCAACATCAACTTTCGCTAA | 627 | 50.56 | MASHFPRRSFVAVIFFLSFMMSEMTMKSVLAIFRPSPWQLAHATFYGDETASETMATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANINFR | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4289137 | 4290691 | - | ClG42_10g0033900.10 | Clacu10g0339 | 258963 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0339 | 208 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 123 | 203 | IPR007117 | - | |
Clacu10g0339 | 208 | PANTHER | EXPANSIN-A15 | 56 | 203 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | Gene3D | - | 53 | 108 | IPR036908 | - | |
Clacu10g0339 | 208 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 55 | 113 | IPR007112 | - | |
Clacu10g0339 | 208 | SUPERFAMILY | Barwin-like endoglucanases | 35 | 131 | IPR036908 | - | |
Clacu10g0339 | 208 | SUPERFAMILY | PHL pollen allergen | 110 | 202 | IPR036749 | - | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 52 | 62 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 189 | 205 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 71 | 88 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 124 | 145 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 88 | 101 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | PRINTS | Expansin signature | 112 | 124 | IPR002963 | GO:0009664(InterPro) | |
Clacu10g0339 | 208 | Gene3D | - | 109 | 208 | IPR036749 | - | |
Clacu10g0339 | 208 | Pfam | Lytic transglycolase | 55 | 103 | IPR009009 | - | |
Clacu10g0339 | 208 | SMART | dpbb_1 | 25 | 103 | IPR007112 | - | |
Clacu10g0339 | 208 | Pfam | Expansin C-terminal domain | 115 | 192 | IPR007117 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g0339 | Clacu-Chr10:4289137 | Clacu11g0714 | Clacu-Chr11:7020692 | 1.40E-45 | dispersed | |
Clacu01g0332 | Clacu-Chr1:3313546 | Clacu10g0339 | Clacu-Chr10:4289137 | 2.10E-36 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0339 | - | - | - | 0.0 |