Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0339 ATGGCTTCCCATTTCCCTCGTCGGAGCTTTGTCGCCGTCATCTTCTTCTTGTCGTTTATGATGTCGGAGATGACAATGAAATCGGTGCTCGCCATCTTTCGACCAAGCCCTTGGCAGCTCGCCCATGCCACCTTCTATGGTGATGAGACAGCATCAGAAACAATGGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAATGCCGGTGGATGGTGCAACCCACCGAGGGTTCACTTCGACATGTCAAAGCCAGCCTTCATGAAGATCGCCAACTGGAAGGCCGGGATCATCCCCGTTGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGGTTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTAATGAACGTCGGCGGTGGCGGAGACGTGTCGGGAATGTGGGTGAAAGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCGACCTACAATGCCAACATCAACTTTCGCTAA 627 50.56 MASHFPRRSFVAVIFFLSFMMSEMTMKSVLAIFRPSPWQLAHATFYGDETASETMATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANINFR 208
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4289137 4290691 - ClG42_10g0033900.10 Clacu10g0339 258963
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0339 208 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 123 203 IPR007117 -
Clacu10g0339 208 PANTHER EXPANSIN-A15 56 203 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 Gene3D - 53 108 IPR036908 -
Clacu10g0339 208 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 113 IPR007112 -
Clacu10g0339 208 SUPERFAMILY Barwin-like endoglucanases 35 131 IPR036908 -
Clacu10g0339 208 SUPERFAMILY PHL pollen allergen 110 202 IPR036749 -
Clacu10g0339 208 PRINTS Expansin signature 52 62 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 PRINTS Expansin signature 189 205 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 PRINTS Expansin signature 71 88 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 PRINTS Expansin signature 124 145 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 PRINTS Expansin signature 88 101 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 PRINTS Expansin signature 112 124 IPR002963 GO:0009664(InterPro)
Clacu10g0339 208 Gene3D - 109 208 IPR036749 -
Clacu10g0339 208 Pfam Lytic transglycolase 55 103 IPR009009 -
Clacu10g0339 208 SMART dpbb_1 25 103 IPR007112 -
Clacu10g0339 208 Pfam Expansin C-terminal domain 115 192 IPR007117 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0339 Clacu-Chr10:4289137 Clacu11g0714 Clacu-Chr11:7020692 1.40E-45 dispersed
Clacu01g0332 Clacu-Chr1:3313546 Clacu10g0339 Clacu-Chr10:4289137 2.10E-36 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0339 - - - 0.0