Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0341 | ATGGCTGGTCGAATTTTTGAAACCTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATTTTGCTATTGCATGGTTATTTAGACATTTGGGTTAAAGGAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCAAAAGTGTCCTTTAAGGGTTCCAAAAACAGTGATGGGCAAAAGCCTCAAAAAGTCACTAGTGATCCCTATGTGACTATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAACAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAGGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAAGAAGTGTATTCCGGAGCCATAGTTGATGGAACGTACCCAATCTTAAATAGCAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCAAGCGGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCATCAGGGAGTTTCAGGCACATATTTCCCCCTTAGGAAGGGGGGTAAAGTTACGTTGTACCAAGATGCCCATGTTGACGATGGTTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATGAACATAGGAGCTGCTGGGATGACATCTCTGAATCGATTAGTCAGGCTCGCCGTTTGATCTATATTACAGGCTGGTCCGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGTATGTTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGACGATCCAACTTCAACTAGTATGTTGGGATATAAGACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCATCAGTCCAAGTGATTTTGTGCCCACGATCAGGTGGAAAAGGTCATAGTTGGATTAAAAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGGGACCAACTACTGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGATGGTCCAGCGGCGTATGACGTCCTTGCAAATTTTGAGGAGCGCTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAGAAGCTAAAGAGATTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATAACTGATGCTTCTCAACTTTGTAATAATGATCCAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATTGATTCCAACTCCGTAAAAGGATTTCCTGACAAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATCGAAAACCAGTACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTAGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCCATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATACAAGGCGTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAGGTGCTCGATGTCAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTATTGGGATCGGCAAATATCAATCAACGGTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAGCCCCGTCATACATGGTCATCGAGAAAACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCTTTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATCAGGTCATTGGGTGAGAGAAATTGGAGGCAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTGACCCATCTTCCTGGTTCTGAAACCTTCCCTGACCTTGGTGGCAACATATTAGGAACATTCACAGTCATACAAGAAAATCTTACAATTTGA | 2556 | 41.39 | MAGRIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDIWVKGAKNLPNLDMFHKTLGDMFSKVSFKGSKNSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEEVYSGAIVDGTYPILNSSRKPCKPGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVDDGCLPTDFRLHGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECMLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKRLHEDVLLKIERIPEILGITDASQLCNNDPEAWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSRKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYAAEEVSEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFTVIQENLTI | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4306257 | 4312176 | + | ClG42_10g0034100.10 | Clacu10g0341 | 258965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0341 | 851 | SMART | C2_3c | 40 | 162 | IPR000008 | - | |
Clacu10g0341 | 851 | Pfam | Phospholipase D Active site motif | 698 | 723 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | Pfam | Phospholipase D Active site motif | 366 | 396 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | SUPERFAMILY | Phospholipase D/nuclease | 533 | 783 | - | - | |
Clacu10g0341 | 851 | SUPERFAMILY | Phospholipase D/nuclease | 206 | 463 | - | - | |
Clacu10g0341 | 851 | FunFam | Phospholipase D | 512 | 742 | - | - | |
Clacu10g0341 | 851 | Gene3D | Endonuclease Chain A | 239 | 478 | - | - | |
Clacu10g0341 | 851 | ProSiteProfiles | C2 domain profile. | 15 | 163 | IPR000008 | - | |
Clacu10g0341 | 851 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 696 | 723 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | Gene3D | Endonuclease Chain A | 507 | 759 | - | - | |
Clacu10g0341 | 851 | CDD | C2_plant_PLD | 35 | 186 | - | - | |
Clacu10g0341 | 851 | FunFam | Phospholipase D delta | 241 | 478 | - | - | |
Clacu10g0341 | 851 | Pfam | Phospholipase D C terminal | 771 | 841 | IPR024632 | - | |
Clacu10g0341 | 851 | PIRSF | PLD_plant | 26 | 851 | IPR011402 | GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro) | |
Clacu10g0341 | 851 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 364 | 399 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | Pfam | C2 domain | 39 | 164 | IPR000008 | - | |
Clacu10g0341 | 851 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 37 | 187 | IPR035892 | - | |
Clacu10g0341 | 851 | Gene3D | C2 domain | 26 | 186 | IPR035892 | - | |
Clacu10g0341 | 851 | SMART | pld_4 | 696 | 723 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | SMART | pld_4 | 364 | 399 | IPR001736 | GO:0003824(InterPro) | |
Clacu10g0341 | 851 | PANTHER | PHOSPHOLIPASE D | 36 | 841 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1566 | Clacu-Chr2:29056899 | Clacu10g0341 | Clacu-Chr10:4306257 | 3.30E-32 | dispersed | |
Clacu06g0019 | Clacu-Chr6:419311 | Clacu10g0341 | Clacu-Chr10:4306257 | 0.00E+00 | dispersed | |
Clacu09g0279 | Clacu-Chr9:2499428 | Clacu10g0341 | Clacu-Chr10:4306257 | 3.00E-200 | dispersed | |
Clacu10g0341 | Clacu-Chr10:4306257 | Clacu08g1564 | Clacu-Chr8:25477023 | 7.80E-252 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0341 | K01115 | - | csv:101208016 | 1684.08 |