Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0345 ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAGTTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA 996 44.78 MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4362770 4370825 - ClG42_10g0034500.10 Clacu10g0345 258969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0345 331 Gene3D - 235 327 - -
Clacu10g0345 331 FunFam replication factor C subunit 2 235 327 - -
Clacu10g0345 331 FunFam Replication factor C subunit 4 7 170 - -
Clacu10g0345 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Clacu10g0345 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu10g0345 331 SMART AAA_5 45 177 IPR003593 GO:0016887(InterPro)
Clacu10g0345 331 Gene3D - 7 170 IPR027417 -
Clacu10g0345 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 13 324 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Clacu10g0345 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Clacu10g0345 331 CDD AAA 28 165 - -
Clacu10g0345 331 Gene3D - 171 234 - -
Clacu10g0345 331 CDD HLD_clamp_RFC 170 232 IPR047854 -
Clacu10g0345 331 FunFam Replication factor C subunit 4 171 234 - -
Clacu10g0345 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0732 Clacu-Chr8:17176022 Clacu10g0345 Clacu-Chr10:4362770 8.40E-54 dispersed
Clacu10g0345 Clacu-Chr10:4362770 Clacu11g1775 Clacu-Chr11:28970258 2.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0345 K10755 - csv:101208984 634.795