Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0346 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGATACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTAAGTTGTGTGTAGTTGTGAAAGAGATCAATCAGCAAACTCAGTATAGGGCCCTTTCTTTTGCTGCAGTTGCTATTGTTGTTGTAGTGAATATTATTCTTTGCTGTAGTTCTTGCTCTGCTCGGGTTGCTCGTGTAAATGGCGATATGAAAGGTTCTCTGTAA 1257 47.33 MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECDTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCKLCVVVKEINQQTQYRALSFAAVAIVVVVNIILCCSSCSARVARVNGDMKGSL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4374986 4380348 + ClG42_10g0034600.10 Clacu10g0346 258970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0346 418 Pfam Ring finger domain 327 368 IPR001841 -
Clacu10g0346 418 PANTHER TARGET OF ERK KINASE MPK-1 43 368 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu10g0346 418 SUPERFAMILY RING/U-box 319 371 - -
Clacu10g0346 418 MobiDBLite consensus disorder prediction 1 36 - -
Clacu10g0346 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 377 IPR013083 -
Clacu10g0346 418 SMART ring_2 328 368 IPR001841 -
Clacu10g0346 418 MobiDBLite consensus disorder prediction 1 28 - -
Clacu10g0346 418 ProSiteProfiles Zinc finger RING-type profile. 328 368 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0207 Clacu-Chr5:1838311 Clacu10g0346 Clacu-Chr10:4374986 3.70E-122 dispersed
Clacu10g0346 Clacu-Chr10:4374986 Clacu10g1642 Clacu-Chr10:29804694 5.80E-67 dispersed
Clacu10g0346 Clacu-Chr10:4374986 Clacu10g2071 Clacu-Chr10:34107028 1.40E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0346 - - - 0.0