Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0352 ATGGCGATGCGAGAATTGGTTACTGGAGCAGCTTCTTGTGCGGTTCCTGGTTCTTCTTCTTCTTCTAACCCTCTCGGTGCTCTTGCCAACGCTCTAATTGGCTCCTCTTCCAAGACCCAGGAAAGGTTACGGGAAATTCCTACATCGCAGCTCACAGGTCCTGAAAGGCCTTTTGCCCCTGAGACCCATGAGCAGCTCCCTGGGTCTGAGTTTGATCACCCACCGCTTCAACCCAATCAGCAGGCGTCAAATTTTTTTAATGGCTTCCACTCGGCTGCCAATCACAGTGGTATGGCCTCTGCATGGAATGAGGTACAGGGCGGTCCTCCTCCTGCCCACTTGAGAGAAATGCAACCAAGTCTTGCTGAATTTGATCGTATTTATGACCAAGTTCCTGCTTCTCAGCATCAACCGATATTGGATGGGCCACCACAAAGAGTGCTATCAACCTTTTTGCACTCATTTGTAGAGAGTAGCCGTGGTGGAGTACCTTTTCATCCAACCCCTCTGCCTTTATTGGGACTATCTGAAGGCGATAAACAATGTATACGGGATCGTAGTAGCATAATGGCTCGACATTTCTTTGCAGATAAGAGTGAAGACTTCATAAATGCACAGGTAAGTGCACTTCTATCTTCCTTGGACATCGACACCAGTAAACAGGTTAGGGGGCCTCAACCTGGTAGGTTCCATGAGTTGGAGGATTATTGGAATGAATCTCAAGCTCTCCAGAGACCTGGTGGTCATATTGCAGATGGGTGGGCTTCTGAATATAGCCTTAACAGGGAAAAGTATGGTGGTCATGACGCTTGGGCTCAATCCTTTGAACAACAATATGGTGCCAATGGCTGGGCCTCTGAGTTTGAGCAGGAGAAGTTTCAGTTAGCATCGGCAGAAAGAATTGGTGGTAATATGATGAACTTATCTGCAATGGAGCAGACTCGCAAGCTTGCAAATACATTAGCTGAAAATAACGACCCTAAATTTCAGAACTCAAAGTTCCTTCAGTTTGTTTCGAAGATGAGTAGGGGTGAACTTATTATTGATGATAATCAAGTCAAGCCAAACTCTTTATCTCCAACAGATAACTGGGCTTCCGAGTATCAGCAACAGTATAGTGGAGGTCTTCCCTGGGCTGATGAATTTGTTTCTAATCAAACTAATCGGTGGGCTGATGAGTTTGCTGAAGAGAAGAGACATGTGTCAGATGATCCATGGGTAAATGAATTTTCCAAGTTGCACATGCAAGACTGGGTGGAAGAATTTGGTCAGCAGGTTGGAGAAGGGGCTTCTGGAGAGGTCGACAATTGGGCAAATGCATATGATGAGTATGTAAATGAACAAGTAGCTGCCAAGGGTAAAACGGATGCTTCAAAGGGAATCTATGTCTTTTCTGATATGAACCCATATGTTGGTCATCCTAATCCCTTGAAGGAAGGCCAAGATCTGTTCCGTAAAGGCCTTCTGAGTGAGGCAGTGCTTGCTTTAGAGGCTGAAGTTATGAAAAACCCTGAAAATGCTGAAGGCTGGAGGCTTCTTGGAATTGCACATGCTGAAAATGATGATGATCAACAGGCTATTGCTGCCATGAAACGGGCACTAGATGTTGACCCTACAAATTTAGAGGTGCTTCTTGCACTTGGTGTGAGTCACACAAATGAATTAGAGCAAGCAGCTGCATTAAGATACTTGTATGGATGGTTACAGCATCACCCAAAGTATGGGACACTTGCAAAACCGGAGCTTTCTGATTCGTTGTACTATGCTGATGTAGCTGGCTTATTTAACGAAGCTGCACAAATGTTTCCTGATGATGTTGATGTGCACATAGTACTTGGCGTCCTTTATAATTTGTCCAGAGAATTTGACAAAGCTATTGCATCCTTTCAGACAGCCTTGAAACTAAAGCCGCAAGATTATTCTCTTTGGAACAAGCTAGGTGCTACACAAGCTAACAGCATTCAAAGTGCTGATGCTATATTAGCTTATCAACAGGCACTTGATTTGAAGCCTAATTACGTACGTGCCTGGGCCAATATGGGAATCAGTTATGCTAATCAGGGCCTCTATGAGGAATCAATCAAGTACTATGTGAGATCACTTAGTATGAATCCAAAGGCAGACAATGCATGGCAATATTTAAGAATTTCACTAAGCTGTGCATCAAGGAACGACATGCTGGAAGCCTGTGATTCCCGCAATCTTGATGCTCTTCAGAAGGAGTTCCCATTATGA 2235 44.47 MAMRELVTGAASCAVPGSSSSSNPLGALANALIGSSSKTQERLREIPTSQLTGPERPFAPETHEQLPGSEFDHPPLQPNQQASNFFNGFHSAANHSGMASAWNEVQGGPPPAHLREMQPSLAEFDRIYDQVPASQHQPILDGPPQRVLSTFLHSFVESSRGGVPFHPTPLPLLGLSEGDKQCIRDRSSIMARHFFADKSEDFINAQVSALLSSLDIDTSKQVRGPQPGRFHELEDYWNESQALQRPGGHIADGWASEYSLNREKYGGHDAWAQSFEQQYGANGWASEFEQEKFQLASAERIGGNMMNLSAMEQTRKLANTLAENNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPNSLSPTDNWASEYQQQYSGGLPWADEFVSNQTNRWADEFAEEKRHVSDDPWVNEFSKLHMQDWVEEFGQQVGEGASGEVDNWANAYDEYVNEQVAAKGKTDASKGIYVFSDMNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVMKNPENAEGWRLLGIAHAENDDDQQAIAAMKRALDVDPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGTLAKPELSDSLYYADVAGLFNEAAQMFPDDVDVHIVLGVLYNLSREFDKAIASFQTALKLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDALQKEFPL 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4452097 4464277 + ClG42_10g0035200.10 Clacu10g0352 258976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0352 744 ProSiteProfiles TPR repeat profile. 640 673 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 SMART tpr_5 640 673 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 SMART tpr_5 507 540 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 SMART tpr_5 674 707 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 SMART tpr_5 606 639 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 ProSiteProfiles TPR repeat profile. 674 707 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 11 742 IPR024111 GO:0005052(PANTHER)|GO:0005778(PANTHER)|GO:0005829(PANTHER)|GO:0016560(PANTHER)
Clacu10g0352 744 FunFam Peroxisome biogenesis protein 5 456 744 - -
Clacu10g0352 744 Gene3D Tetratricopeptide repeat domain 456 744 IPR011990 GO:0005515(InterPro)
Clacu10g0352 744 ProSiteProfiles TPR repeat profile. 507 540 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 MobiDBLite consensus disorder prediction 33 47 - -
Clacu10g0352 744 MobiDBLite consensus disorder prediction 33 84 - -
Clacu10g0352 744 Pfam Tetratricopeptide repeat 593 639 - -
Clacu10g0352 744 Pfam Tetratricopeptide repeat 477 539 - -
Clacu10g0352 744 SUPERFAMILY TPR-like 459 744 IPR011990 GO:0005515(InterPro)
Clacu10g0352 744 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 Pfam Tetratricopeptide repeat 675 706 IPR019734 GO:0005515(InterPro)
Clacu10g0352 744 ProSiteProfiles TPR repeat region circular profile. 674 706 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0352 K13342 - - csv:101209718 1429.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43