Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0358 ATGAAGGCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTGTCAGAATCACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTTGTGTGCTTTGGTTTCTGTGAAGCGTTACATTCATCAAGCTCCTGTTTTTCCCCTTACTTTGGAGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTATGAGTTCTGCTGGAGACTTTCGGCCAGGCCAGAAGGTATAATTTTCAGGACGATATTGCAGTTTAGTCTTGAACCTGGTTCTAGAGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTCCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGAAATTTTGAAGAAAAGAAGATTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCGTTGTAACCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAATGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGTTATCAGTCTAAATGGATGCAAGAAAAAAAAGATCTAGTGGAAGCAGCAAAGAGAAGCTCGTTCAGGCTGTGGTCTCTTCATAATTTGTGGCTTCTGTAA 4797 40.46 MKAERASHHNPTRAVCRKFLQVSESLPPLAEQETSRNFVSGVVCFGFCEALHSSSSCFSPYFGVVNWLGWEKKLYEFCWRLSARPEGIIFRTILQFSLEPGSRVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVPLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLRCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWMQEKKDLVEAAKRSSFRLWSLHNLWLL 1598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4523720 4541186 - ClG42_10g0035800.10 Clacu10g0358 258982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0358 1598 Gene3D RNA polymerase ii 466 518 - -
Clacu10g0358 1598 Pfam RNA polymerase Rpb1, domain 3 595 743 IPR007066 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu10g0358 1598 Gene3D - 1463 1554 - -
Clacu10g0358 1598 Gene3D RNA polymerase II, clamp domain 119 218 IPR044893 -
Clacu10g0358 1598 PANTHER DNA-DIRECTED RNA POLYMERASE 122 1393 IPR045867 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)
Clacu10g0358 1598 SMART rpolaneu7 333 620 IPR006592 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu10g0358 1598 Pfam RNA polymerase Rpb1, domain 4 809 867 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu10g0358 1598 Gene3D - 766 920 IPR038120 -
Clacu10g0358 1598 Gene3D - 428 599 - -
Clacu10g0358 1598 Pfam Protein of unknown function (DUF3223) 1479 1552 - -
Clacu10g0358 1598 Gene3D RNA polymerase Rpb1, domain 3 600 748 IPR042102 -
Clacu10g0358 1598 Pfam RNA polymerase Rpb1, domain 2 433 591 IPR000722 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Clacu10g0358 1598 CDD RNAP_IV_RPD1_N 131 967 IPR040403 -
Clacu10g0358 1598 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 119 1392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0358 K16250 - - csv:101214578 2782.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0752 Clacu-Chr1:8113571 Clacu10g0358 Clacu-Chr10:4523720 2.40E-103 dispersed
Clacu10g0358 Clacu-Chr10:4523720 Clacu10g1707 Clacu-Chr10:30543766 1.40E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40