Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0365 | ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCGTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCAAAGCTTTCACCACCAGTCTCTGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG | 507 | 54.64 | MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDQSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDSWNSSGDGNLWSYH | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4637407 | 4637913 | - | ClG42_10g0036500.10 | Clacu10g0365 | 258989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0365 | 168 | SUPERFAMILY | DNA-binding domain | 12 | 69 | IPR016177 | GO:0003677(InterPro) | |
Clacu10g0365 | 168 | SMART | rav1_2 | 12 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0365 | 168 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 6 | 167 | IPR045277 | GO:0003700(InterPro) | |
Clacu10g0365 | 168 | Pfam | AP2 domain | 12 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0365 | 168 | CDD | AP2 | 12 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0365 | 168 | FunFam | Ethylene-responsive transcription factor 2 | 11 | 69 | - | - | |
Clacu10g0365 | 168 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu10g0365 | 168 | Gene3D | AP2/ERF domain | 11 | 69 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0920 | Clacu-Chr5:8147043 | Clacu10g0365 | Clacu-Chr10:4637407 | 2.50E-41 | dispersed | |
Clacu10g0365 | Clacu-Chr10:4637407 | Clacu10g1905 | Clacu-Chr10:32703394 | 3.70E-36 | dispersed | |
Clacu10g0365 | Clacu-Chr10:4637407 | Clacu01g0313 | Clacu-Chr1:3086118 | 5.30E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48446 | PF00847 | AP2 | 5.50E-11 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0365 | - | - | - | 0.0 |