Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0365 ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCGTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCAAAGCTTTCACCACCAGTCTCTGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 507 54.64 MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDQSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDSWNSSGDGNLWSYH 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4637407 4637913 - ClG42_10g0036500.10 Clacu10g0365 258989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0365 168 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677(InterPro)
Clacu10g0365 168 SMART rav1_2 12 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0365 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 167 IPR045277 GO:0003700(InterPro)
Clacu10g0365 168 Pfam AP2 domain 12 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0365 168 CDD AP2 12 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0365 168 FunFam Ethylene-responsive transcription factor 2 11 69 - -
Clacu10g0365 168 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0365 168 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0920 Clacu-Chr5:8147043 Clacu10g0365 Clacu-Chr10:4637407 2.50E-41 dispersed
Clacu10g0365 Clacu-Chr10:4637407 Clacu10g1905 Clacu-Chr10:32703394 3.70E-36 dispersed
Clacu10g0365 Clacu-Chr10:4637407 Clacu01g0313 Clacu-Chr1:3086118 5.30E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48446 PF00847 AP2 5.50E-11 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0365 - - - 0.0