Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0369 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCGATTGAGAAGTGAAGCACAGCCACCATTTCCAGCTTGCCATTTGCAGTTGCCCACTTCAATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCTAAAGACACCTCTGCCACTGCCCGATCCCCGTCAATCCGCCCGGTTGCGCTCTCCGTCGAGAAGCAGAACATCAGGCTCCCGCCGTTATCCGCCACCAACCAGCAGATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGTTTGATGATGATGATTCTTCCATTAACAGCGCCAAGAGGAAGAGAGAGTGCAGAGACGACGCTGGAGATGGACTAATTCTAAGCCAATTCGGCGGTGGGGGTGGTGGGAGTTTCTGGTTTCATCAGCCTGATGGGGATGAAGAAGGAATCTGTTTTCTTCCTGGAAGTGAAGTAATTTCTTCACCGTCGCCGTTTTTTTCAGAGATCGCCGACTTCGGAGAAGGAAATGATGGAGAAAGCAGCCATGTAAAGGCTCAGGAAGGCTCCGGTTCGGGTTCAGGGTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTAAGAAGCAGAGTAACAACAGAGAATGTTTCAGCAGCAGCAACAACAGTGCCAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGGTTCTGGTTTAGAGAATGAAAGGGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTAGAAGCAATTGGATCAAAGAACATTGGTTTGATTAACCATTTGATAGATAAACTTGGGAGTCAAGCTTCACCAAGAGGCTCATCACCAATTACACGTTTGATTGCGTATTACACAGAGGCTTTAGCAGTTAGAGTGAGCAGAGTTTGGCCACAGGTTTTTCACATAACAACACCAAGGGAATACGATCGGATGGAGGACGATACGGGGACAGCACTACGGCTGCTAAACGAGGTGAGCCCGATCCCGAAATTCATCCACTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGGAAAGACAGGGTTCACATCATAGACTTTGACATAAAGCAAGGGCTGCAATGGCCAAGCTTGTTCCAAAGTTTGGCATCTAGAACAAACCCTCCAAGTCATGTACGAATCACTGGGATCGGTGAGTCAAAGCAGGAATTGAACGAAACGGGAGATAGGCTAGCAGGGTTCGCTGAGGCATTGAGGCTGCCGTTCGAGTTTCATGCCGTGGTGGACCGGTTGGAGGATGTGAGACTGTGGATGCTTCATGTCAAGGAGCAAGAAAGTGTAGGAGTGAATTGCATGCTCCAACTTCACAAGACACTGTACGATGGCAATGGAGGAGCATTGAGGGACTTTTTGGGGCTCATAAGAAGCACAAACCCAAGTATTGTTGTCATGGCTGAGCAAGAAGCTGAGCACAACGAACCGAGGTTAGAGAGTCGAGTTACAGCAACATTGAAGTACTACGCTGCCATATTCGATTCCCTCGATGCTAGTCTTCCACCCGATAGCTCAGCCAGGTTGAAAATTGAGGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGAGAGATATGAAAGACATGTTGGATTTAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGTCTGCAATGCGTCGGGATTTGCGACAATCGAGAGCTTCTTCAGACTCAATTCCTCTTGAAAATGTACTCATCAGCTCATGGATTCAAGGTCACAAAGATTGAAGAAGAAGAAGGAGCAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACTCTGTCTCAGCTTGGTCAGCAGCAGAAGTTTCTGGAAGTTCATCTTCATTTAACCATCCAACTTCTTGA 1956 46.73 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDTSATARSPSIRPVALSVEKQNIRLPPLSATNQQIKQEFWNGKGKNLKRIAEQVGFDDDDSSINSAKRKRECRDDAGDGLILSQFGGGGGGSFWFHQPDGDEEGICFLPGSEVISSPSPFFSEIADFGEGNDGESSHVKAQEGSGSGSGSSSSSESERFALRSRVTTENVSAAATTVPEIGNGSSRNPSYHHHQGSGLENEREEEEGFELISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCMLQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVTATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRERYERHVGFKKWKKDMEQQGGLQCVGICDNRELLQTQFLLKMYSSAHGFKVTKIEEEEGAAQAICLTWEDQPLYSVSAWSAAEVSGSSSSFNHPTS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4696612 4698567 + ClG42_10g0036900.10 Clacu10g0369 258993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0369 651 MobiDBLite consensus disorder prediction 170 254 - -
Clacu10g0369 651 MobiDBLite consensus disorder prediction 188 245 - -
Clacu10g0369 651 ProSiteProfiles GRAS family profile. 252 635 IPR005202 -
Clacu10g0369 651 MobiDBLite consensus disorder prediction 1 22 - -
Clacu10g0369 651 MobiDBLite consensus disorder prediction 1 16 - -
Clacu10g0369 651 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 233 634 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu10g0369 651 Pfam GRAS domain family 262 634 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0369 Clacu-Chr10:4696612 Clacu11g1100 Clacu-Chr11:13857617 2.80E-68 dispersed
Clacu10g0369 Clacu-Chr10:4696612 Clacu01g2009 Clacu-Chr1:32012370 1.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48447 PF03514 GRAS 4.70E-122 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0369 K27749 - csv:101209060 1134.01