Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0370 ATGGCGATGCCTTCGCGTGAAGCAATTGATACTTTCATCAGCGTAACCGGAGCCTCCGAAGCCATCGCCGTTCAGAGCCTTGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCTGTGAACGCACGGCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAAGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGGTTCTTTGACCGCAGCTCTGATTTTACAAGTTCTGCTCCTGTTGTTACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTAATCGGCCGTCTGGCCAATCTGGCCATGAGCCAACAATTGAGGATGTCACTGGGACTCTAGATGCCCCTGGTCCAGAGGTTCATGGGACTGTACTAATTGATGATACAGAAGACGAAGAACCTCCAGTTACTTCTATAGCACACGCACCAGATTTAGTGCATCGGGCTGTTGCGAGTAACATATCTCGTGGCAGAAATGCTATAACTGGTGCATTTGATAGTGATGAGTTTCAGGACAGAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGGGCAAGCTTATCCAAATGATCCCATAACTTCGCACACTGATTTAAGCAACCTTAGAACTCAAGAACATCTTTCTCACTTGAATAATTTTGAAGTTTCGCCTGCAGCTTCGTCTATCAAGCCAGAGGAAGATATCCCTCAGCGAGGGGAGAGCATTGGAGGATCAAAAATAGAAGCTTCTAAGTTAACTGAGGTGGACGTGGAGCTGAGGAAAGTCAGAGCACTAAATGGAAGGATGGAAACAGGAAGCACATCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAATAAGGCATCGGTCTAAACGCAAGTCCACTGGCTATGTGGAGCCTGCAAAGGGGGTTGAAGTAGACGTAAACCTTGCATCTAGTCCCAAGCAATCCGATACTAGTAACAATCCACAGCACAATGGGAATATGTTTCCTTCTGATGAGTGGGGCGGAATTTCTTCAGAGGAGCATGACGAAGCAGTCATGCTTGAGGCTGCTATGTTTGGTGGAGGTTCTGAAGGAAGTTCATACCATTTTCCATCTGCACCCCATGAATTCATGAGAAATCAAGGTTCATACATGCAGCCAGCTCCTCGTCCTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTCGCAGCCTTACAAGCTGACAGAGAAAAAGAACTAAAGGCTATGGAAGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACACTTGGCAGAAATAGAAGCTTCTCTTCCAAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGTTACAGTGTCTCTTGCACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGGGTTCATTAACGTTGAATGAACTTGGACTCAACAGCAAACAAGAAGCTTTGTATCTGGAGTTGATTTAA 1782 44.89 MAMPSREAIDTFISVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRSSDFTSSAPVVTHPRELREIPIEFRDGNRPSGQSGHEPTIEDVTGTLDAPGPEVHGTVLIDDTEDEEPPVTSIAHAPDLVHRAVASNISRGRNAITGAFDSDEFQDRNDIEEEMIRAAIEASKKDVGQAYPNDPITSHTDLSNLRTQEHLSHLNNFEVSPAASSIKPEEDIPQRGESIGGSKIEASKLTEVDVELRKVRALNGRMETGSTSAQDEVEDLEEDNLIRHRSKRKSTGYVEPAKGVEVDVNLASSPKQSDTSNNPQHNGNMFPSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYHFPSAPHEFMRNQGSYMQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMEEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLHFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4700869 4706054 - ClG42_10g0037000.10 Clacu10g0370 258994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0370 593 Coils Coil 452 499 - -
Clacu10g0370 593 Pfam UBX domain 512 591 IPR001012 GO:0005515(InterPro)
Clacu10g0370 593 MobiDBLite consensus disorder prediction 468 491 - -
Clacu10g0370 593 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515(InterPro)
Clacu10g0370 593 CDD UBA_Ubx1_like 6 42 - -
Clacu10g0370 593 PANTHER FAS-ASSOCIATED PROTEIN 8 591 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Clacu10g0370 593 MobiDBLite consensus disorder prediction 266 290 - -
Clacu10g0370 593 SMART ubx_3 508 592 IPR001012 GO:0005515(InterPro)
Clacu10g0370 593 ProSiteProfiles UBX domain profile. 511 589 IPR001012 GO:0005515(InterPro)
Clacu10g0370 593 CDD UBX 517 591 - -
Clacu10g0370 593 Gene3D - 5 45 - -
Clacu10g0370 593 Pfam UBA-like domain 6 47 - -
Clacu10g0370 593 SUPERFAMILY Ubiquitin-like 474 583 IPR029071 -
Clacu10g0370 593 Gene3D - 512 592 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0370 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0211 Clacu-Chr5:1869244 Clacu10g0370 Clacu-Chr10:4700869 1.80E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44