Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0378 ATGTCGGAATCTGGATTTGTCGTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAATGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACATTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGATGATGTGGGTAAGACTGTGTCGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTCCGCCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGTAGCAATTGGATCTTCTGACTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCTTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2262 46.29 MSESGFVVRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVSDDQRPFDSLCGGGEHSPPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRVAIGSSDSHINMQPDIPAQAAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4791815 4796655 - ClG42_10g0037800.10 Clacu10g0378 259002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0378 753 SUPERFAMILY WRKY DNA-binding domain 336 396 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 Pfam WRKY DNA -binding domain 554 611 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 Pfam WRKY DNA -binding domain 338 394 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 MobiDBLite consensus disorder prediction 488 520 - -
Clacu10g0378 753 ProSiteProfiles WRKY domain profile. 338 396 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 SMART WRKY_cls 337 395 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 SMART WRKY_cls 553 612 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 SUPERFAMILY WRKY DNA-binding domain 545 613 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 203 633 IPR044810 GO:0003700(InterPro)
Clacu10g0378 753 MobiDBLite consensus disorder prediction 607 633 - -
Clacu10g0378 753 Gene3D WRKY domain 331 397 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 FunFam WRKY transcription factor 328 397 - -
Clacu10g0378 753 MobiDBLite consensus disorder prediction 615 633 - -
Clacu10g0378 753 ProSiteProfiles WRKY domain profile. 548 613 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 Gene3D WRKY domain 540 606 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0378 753 MobiDBLite consensus disorder prediction 265 344 - -
Clacu10g0378 753 FunFam WRKY transcription factor 33 540 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0275 Clacu-Chr2:2515361 Clacu10g0378 Clacu-Chr10:4791815 6.70E-59 dispersed
Clacu03g0017 Clacu-Chr3:374997 Clacu10g0378 Clacu-Chr10:4791815 2.70E-70 dispersed
Clacu03g1044 Clacu-Chr3:18665081 Clacu10g0378 Clacu-Chr10:4791815 6.40E-88 dispersed
Clacu10g0378 Clacu-Chr10:4791815 Clacu11g0604 Clacu-Chr11:5823888 4.30E-68 dispersed
Clacu10g0378 Clacu-Chr10:4791815 Clacu10g0439 Clacu-Chr10:5455623 2.50E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48450 PF03106 WRKY 3.10E-24 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0378 K18835 - csv:101207853 1293.49