Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0378 | ATGTCGGAATCTGGATTTGTCGTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAATGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACATTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGATGATGTGGGTAAGACTGTGTCGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTCCGCCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGTAGCAATTGGATCTTCTGACTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCTTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2262 | 46.29 | MSESGFVVRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVSDDQRPFDSLCGGGEHSPPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRVAIGSSDSHINMQPDIPAQAAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4791815 | 4796655 | - | ClG42_10g0037800.10 | Clacu10g0378 | 259002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0378 | 753 | SUPERFAMILY | WRKY DNA-binding domain | 336 | 396 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | Pfam | WRKY DNA -binding domain | 554 | 611 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | Pfam | WRKY DNA -binding domain | 338 | 394 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | MobiDBLite | consensus disorder prediction | 488 | 520 | - | - | |
Clacu10g0378 | 753 | ProSiteProfiles | WRKY domain profile. | 338 | 396 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | SMART | WRKY_cls | 337 | 395 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | SMART | WRKY_cls | 553 | 612 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | SUPERFAMILY | WRKY DNA-binding domain | 545 | 613 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 203 | 633 | IPR044810 | GO:0003700(InterPro) | |
Clacu10g0378 | 753 | MobiDBLite | consensus disorder prediction | 607 | 633 | - | - | |
Clacu10g0378 | 753 | Gene3D | WRKY domain | 331 | 397 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | FunFam | WRKY transcription factor | 328 | 397 | - | - | |
Clacu10g0378 | 753 | MobiDBLite | consensus disorder prediction | 615 | 633 | - | - | |
Clacu10g0378 | 753 | ProSiteProfiles | WRKY domain profile. | 548 | 613 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | Gene3D | WRKY domain | 540 | 606 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0378 | 753 | MobiDBLite | consensus disorder prediction | 265 | 344 | - | - | |
Clacu10g0378 | 753 | FunFam | WRKY transcription factor 33 | 540 | 606 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0275 | Clacu-Chr2:2515361 | Clacu10g0378 | Clacu-Chr10:4791815 | 6.70E-59 | dispersed | |
Clacu03g0017 | Clacu-Chr3:374997 | Clacu10g0378 | Clacu-Chr10:4791815 | 2.70E-70 | dispersed | |
Clacu03g1044 | Clacu-Chr3:18665081 | Clacu10g0378 | Clacu-Chr10:4791815 | 6.40E-88 | dispersed | |
Clacu10g0378 | Clacu-Chr10:4791815 | Clacu11g0604 | Clacu-Chr11:5823888 | 4.30E-68 | dispersed | |
Clacu10g0378 | Clacu-Chr10:4791815 | Clacu10g0439 | Clacu-Chr10:5455623 | 2.50E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48450 | PF03106 | WRKY | 3.10E-24 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0378 | K18835 | - | csv:101207853 | 1293.49 |