Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0389 ATGGAGGCTTCCAATCTTTCTCTATTGCTTTTGTTCTTCTTCATCTTCACTCTATTGCAAACTTCCATCATTGCCACCAAAAAGTCTTACATCGTTTACTTGGGTTCGGAATCTTCCTCTTCGTTGGATCCTTCCTCTTTATCAGAGCACTCCAAACAAGTGACCGCATTTCATTATGATTTGTTGGGATCTTTGTTGGGAAGTAAAAAGATGGCTGAGGAAGCAATTTTCTACTCCTATACTAGAAGTTTCAATGGTTTCGCAGCCAAACTTGAAGAGAAAGAAGCAGCAGATCTAGCAAGAAACCCTAAGGTGATATCGGTGTTTGAAAATAAGGCAAGAAAATTGCACACAACACGGTCGTGGAATTTTCTTGGAGTGGAGAACGATGTCGGAATTCCTTCCAACTCCATTTGGAATGCTGCAAAGTTTGGTCAAGATATAATCATAGCCAACATGGACACAGGTGTTTGGCCAGAATCAAAGAGCTTTAGTGATGAAGGGTATGGACCTGTGCCATCAAAGTGGAGGGGCATTTGTCAAACCGACTCCACCTTCCATTGCAATAGAAAGCTTATTGGAGGAAGATATTTCTACAAAGGATATGTAGCCAGCGGAGGCACTCTCAACGCCACTTTACTCACCGTACGGGACCACGACGGCCATGGAACCCACACTCTCTCCACCGCCGCCGGAAACTTCGTTGCCGGAGCCAACGTTTTTGGCCATGGCAACGGTACAGCCAAAGGCGGTGCTCCAAAAGCCCGTGCCGCCGCCTACAAGGTCTGCTGGCCTTCATTATTTGACTCACAGTGCTTGGACGCTGATATTCTCGCTGCCTTTGAAGCTGCTGTCGCCGATGGAGTCGACGTCATATCGGCTTCCCTCGGTGGAACCGCCGATGAATATTTCAACGATCCACTTGCTATCGCCGCTTTCCACGCTGTTCAACAAGGCGTTGTCGTCGTCTTCTCCGCTGGCAACTCGGGTCCTTTTCCGATGACCGTCACCAATATTGCCCCCTGGGAAATCACCGTCGCGGCGAGCACCATAGACAGAGATTTCGCCAGTTACGTGGCGATCGGAAACAAGAAACACATCAAGGGTGTAAGTCTTTCTTCAACTGCCCCATTACCGAAGAAGTTCTATCCATTGATCGACTCCGTGAATGCAAAACTCAGCAATGTCACCGAATTCCATGCGCAATTTTGCGGGAAGGAGACGCTTGATCCAATGAAAGTGAAGGGGAAGATAGTGATTTGCCAAACAGGAGAGATTGAAGGAGTGGACAAGAGCTACGAAGCTGCTCGAGCTGGTGCTGTGGGAGTAATTGTAGCTAATGATATTGAAAAAGGAGATGAAATTTATCCTCAATTACACTTCCTTCCAGCTTCAGATATTACCAATACTGATGCTCAATTACTCCAAACATACCTCAAATCCACTACAAATCCAATGGCTCATTTAACGAAAGTCAAAACTCAGCTCAATATCAAACCAGCTCCAGTCATTGCTACCTTCTCTTCTAGAGGCCCCAACCCAATTAGTCCCTCTATTCTCAAGCCTGACATTATAGCCCCTGGTGTGAACATACTGGCTTCTTACCCTACTGGAAACGCTCCGTCACTCTCCTCCAACGACCGGCGTCGCATTCCGTTTAATGTTATCTCTGGCACTTCCATGTCCTGCCCTCACGTCGCCGGTATCGCCGCTCTTCTCAAGTCTATTCATCCGAATTGGAGCCCTGCTGCCATCAAATCTGCTATTATGACTACTGCCAAAACAAGAGGCAACAACTTGCAAACGATTCTCGACTCAACGAAACTCAAAGCCACACCGTACGCTTATGGTACAGGACTGGTATATCCAAACAATGCAATGGACCCTGGCCTTGTTTATGACACTACCGTTGATGATTACTTGAACTTCTTGTGTGCTCGAGGCTACAATGCAATGGAAATAAAAAAATTCTATGCTAAGCCATTTAGTTGTGTCAAATTGTTCACGGTCACAGATCTCAACTACCCGTCGATTTCAGTTGGGGAATTGAAAATCGGTGCTCCTGTGACAATCAATAGAAGAGTTAAGAATGTGGGAAGTCCAGGCACATATGTCGCAAGTGTCAAGGCGTCGCCTGGAGTTGCGGTTTCAGTCGAGCCGAGCACGTTGCAGTTTAGTAATGTGGATGAAGAGAAGGCCTTCAAGGTTGTATTGCAAAACACAGGAAAAGTGAAACGTGGAGATGTGTTTGGAACATTGATTTGGTCTGATGGGAAGCATTTTGTTAGAAGTCCCATTACAGTGCATTTGGGATCATGA 2319 46.31 MEASNLSLLLLFFFIFTLLQTSIIATKKSYIVYLGSESSSSLDPSSLSEHSKQVTAFHYDLLGSLLGSKKMAEEAIFYSYTRSFNGFAAKLEEKEAADLARNPKVISVFENKARKLHTTRSWNFLGVENDVGIPSNSIWNAAKFGQDIIIANMDTGVWPESKSFSDEGYGPVPSKWRGICQTDSTFHCNRKLIGGRYFYKGYVASGGTLNATLLTVRDHDGHGTHTLSTAAGNFVAGANVFGHGNGTAKGGAPKARAAAYKVCWPSLFDSQCLDADILAAFEAAVADGVDVISASLGGTADEYFNDPLAIAAFHAVQQGVVVVFSAGNSGPFPMTVTNIAPWEITVAASTIDRDFASYVAIGNKKHIKGVSLSSTAPLPKKFYPLIDSVNAKLSNVTEFHAQFCGKETLDPMKVKGKIVICQTGEIEGVDKSYEAARAGAVGVIVANDIEKGDEIYPQLHFLPASDITNTDAQLLQTYLKSTTNPMAHLTKVKTQLNIKPAPVIATFSSRGPNPISPSILKPDIIAPGVNILASYPTGNAPSLSSNDRRRIPFNVISGTSMSCPHVAGIAALLKSIHPNWSPAAIKSAIMTTAKTRGNNLQTILDSTKLKATPYAYGTGLVYPNNAMDPGLVYDTTVDDYLNFLCARGYNAMEIKKFYAKPFSCVKLFTVTDLNYPSISVGELKIGAPVTINRRVKNVGSPGTYVASVKASPGVAVSVEPSTLQFSNVDEEKAFKVVLQNTGKVKRGDVFGTLIWSDGKHFVRSPITVHLGS 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4913663 4921215 + ClG42_10g0038900.10 Clacu10g0389 259013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0389 772 CDD PA_subtilisin_like 358 487 - -
Clacu10g0389 772 CDD Peptidases_S8_3 115 593 IPR034197 -
Clacu10g0389 772 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
Clacu10g0389 772 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
Clacu10g0389 772 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Clacu10g0389 772 Gene3D - 644 770 - -
Clacu10g0389 772 Gene3D - 352 496 - -
Clacu10g0389 772 Gene3D Peptidase S8/S53 domain 147 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu10g0389 772 ProSiteProfiles Serine proteases, subtilase domain profile. 121 627 - -
Clacu10g0389 772 Pfam Subtilase family 145 598 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu10g0389 772 Pfam Fibronectin type-III domain 672 768 IPR041469 -
Clacu10g0389 772 Pfam PA domain 403 475 IPR003137 -
Clacu10g0389 772 SUPERFAMILY PA domain 409 502 IPR046450 -
Clacu10g0389 772 SUPERFAMILY Subtilisin-like 116 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu10g0389 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 558 568 IPR023828 -
Clacu10g0389 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 117 IPR037045 -
Clacu10g0389 772 Pfam Peptidase inhibitor I9 29 117 IPR010259 -
Clacu10g0389 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 766 IPR045051 -
Clacu10g0389 772 FunFam Subtilisin-like protease SBT5.3 19 117 - -
Clacu10g0389 772 FunFam Subtilisin-like protease SBT1.5 147 366 - -
Clacu10g0389 772 FunFam subtilisin-like protease SBT1.5 352 496 - -
Clacu10g0389 772 FunFam Subtilisin-like protease SBT1.5 644 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0389 Clacu-Chr10:4913663 Clacu10g0395 Clacu-Chr10:4988883 2.20E-253 dispersed
Clacu10g0388 Clacu-Chr10:4900399 Clacu10g0389 Clacu-Chr10:4913663 2.50E-259 tandem
Clacu10g0389 Clacu-Chr10:4913663 Clacu10g0390 Clacu-Chr10:4921865 3.00E-274 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0389 - - - 0.0