Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0399 ATGTGTGAGCTTTCAAAAGAAAGTGAATTAAGAAACTTAGAGAGGATAAATAAGCATTTCTGCGCTCAAAAACCTACAAAATTTGTTCCTGTTCTGTTCCGTTGTCTCGGGGTAGCCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGGCAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1386 41.92 MCELSKESELRNLERINKHFCAQKPTKFVPVLFRCLGVADRRQPKLPFWFLPLQAKSSRKFCDPEFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5040621 5046372 + ClG42_10g0039900.10 Clacu10g0399 259023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0399 461 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 449 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Clacu10g0399 461 FunFam Vacuolar cation/proton exchanger 141 280 - -
Clacu10g0399 461 Pfam Sodium/calcium exchanger protein 301 443 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0399 461 Pfam Sodium/calcium exchanger protein 112 267 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0399 461 FunFam Vacuolar cation/proton exchanger 289 445 - -
Clacu10g0399 461 NCBIfam calcium/proton exchanger 94 444 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu10g0399 461 Gene3D - 288 445 IPR044880 -
Clacu10g0399 461 Gene3D - 141 283 IPR044880 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0399 K07300 - - csv:101205761 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1083 Clacu-Chr2:20252311 Clacu10g0399 Clacu-Chr10:5040621 2.60E-158 dispersed
Clacu03g0077 Clacu-Chr3:955976 Clacu10g0399 Clacu-Chr10:5040621 1.60E-85 dispersed
Clacu07g1423 Clacu-Chr7:28997858 Clacu10g0399 Clacu-Chr10:5040621 1.10E-152 dispersed
Clacu10g0399 Clacu-Chr10:5040621 Clacu10g2169 Clacu-Chr10:34830172 5.80E-92 dispersed
Clacu10g0399 Clacu-Chr10:5040621 Clacu04g0759 Clacu-Chr4:21896479 3.60E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g743 Blo03g00483 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00392 Cam10g0392 Cec10g0414 Cco10g0404 Clacu10g0399 Cmu10g1232 Cre10g0647 . . . . . Csa03g00398 . Cme06g02728 . . . . . . . . Sed08g2890 . . . . . . . . Bhi11g00434 Tan01g1872 Cmetu06g1807 . . Mch10g1417 . . . . . . . . . . Chy06g01915 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g2409 . 1 406 Antiporters AT5G46110 79.6 2.1e-173 605.5
Clacu05g2572 . 51 415 Antiporters AT5G46110 74.0 6.7e-148 520.8
Clacu10g0539 . 1 395 Antiporters AT5G54800 73.7 1.4e-160 562.8
Clacu05g1612 . 1 395 Antiporters AT5G54800 73.2 3.0e-158 555.1
Clacu01g2286 . 46 375 Antiporters AT5G54800 74.4 6.5e-137 484.2
Clacu09g1956 . 51 394 Antiporters AT3G01550 64.6 1.3e-121 433.3
Clacu01g1369 . 53 417 Antiporters AT3G01550 59.5 1.4e-112 403.3
Clacu01g1369 . 1 419 Antiporters AT5G33320 72.4 1.1e-155 546.6
Clacu09g1956 . 69 397 Antiporters AT5G33320 61.2 2.7e-109 392.5
Clacu05g1612 . 1 396 Antiporters AT1G61800 72.6 9.9e-160 560.1
Clacu10g0539 . 39 396 Antiporters AT1G61800 78.2 9.2e-158 553.5
Clacu01g2286 . 46 372 Antiporters AT1G61800 77.9 2.1e-146 515.8
Clacu05g0282 . 106 405 Antiporters AT1G61800 52.6 1.2e-85 313.9
Clacu05g0282 . 48 417 Antiporters AT5G17630 74.2 3.2e-150 528.5
Clacu05g1612 . 81 394 Antiporters AT5G17630 53.9 6.4e-90 328.2
Clacu10g0539 . 89 394 Antiporters AT5G17630 53.7 7.1e-89 324.7
Clacu10g0399 . 80 449 Antiporters AT3G13320 80.3 7.9e-163 570.5
Clacu02g1083 . 72 450 Antiporters AT3G13320 76.6 1.1e-156 550.1
Clacu07g1423 . 149 518 Antiporters AT3G13320 75.7 1.8e-154 542.7
Clacu04g0759 . 5 430 Antiporters AT2G38170 72.0 1.2e-164 576.6
Clacu10g2169 . 8 419 Antiporters AT2G38170 63.5 7.7e-140 494.2
Clacu03g0077 . 32 394 Antiporters AT2G38170 61.7 1.4e-120 430.3
Clacu04g0759 . 1 398 Antiporters AT3G51860 72.4 1.7e-152 536.2
Clacu10g2169 . 4 395 Antiporters AT3G51860 65.6 8.7e-136 480.7
Clacu03g0077 . 32 370 Antiporters AT3G51860 66.0 3.7e-118 422.2
Clacu10g0399 . 80 420 Antiporters AT3G51860 51.3 1.5e-82 303.9
Clacu02g1083 . 64 417 Antiporters AT3G51860 50.4 1.9e-82 303.5
Clacu07g1423 . 155 486 Antiporters AT3G51860 50.1 1.3e-78 290.8
Clacu04g0759 . 34 435 Antiporters AT5G01490 62.5 2.2e-136 482.6
Clacu10g2169 . 29 422 Antiporters AT5G01490 62.8 3.3e-132 468.8
Clacu03g0077 . 26 396 Antiporters AT5G01490 56.7 2.6e-113 406.0
Clacu10g0399 . 79 449 Antiporters AT1G55720 76.3 1.4e-151 533.1
Clacu02g1083 . 72 446 Antiporters AT1G55720 73.7 1.5e-145 513.1
Clacu07g1423 . 149 515 Antiporters AT1G55720 71.4 1.6e-139 493.0
Clacu10g0399 . 79 449 Antiporters AT1G55730 80.9 1.9e-164 575.9
Clacu02g1083 . 54 446 Antiporters AT1G55730 74.4 2.6e-158 555.4
Clacu07g1423 . 149 519 Antiporters AT1G55730 76.3 7.1e-156 547.4
Clacu04g0759 . 65 431 Antiporters AT1G55730 51.5 9.8e-97 350.9
Clacu03g1685 . 4 534 Antiporters AT5G27150 77.6 1.0e-233 806.2
Clacu06g0532 . 22 527 Antiporters AT5G27150 74.8 1.4e-217 752.7
Clacu09g0632 . 102 609 Antiporters AT5G27150 70.5 1.7e-204 709.1
Clacu09g2119 . 12 517 Antiporters AT5G27150 60.4 5.8e-168 587.8
Clacu06g0532 . 22 536 Antiporters AT3G06370 71.9 3.7e-210 728.0
Clacu03g1685 . 5 535 Antiporters AT3G06370 70.3 6.5e-207 717.2
Clacu09g0632 . 102 612 Antiporters AT3G06370 66.7 3.0e-188 655.2
Clacu09g2119 . 5 517 Antiporters AT3G06370 59.3 4.9e-162 568.2
Clacu09g2119 . 1 524 Antiporters AT5G55470 69.5 1.1e-211 733.0
Clacu03g1685 . 18 520 Antiporters AT5G55470 60.2 6.1e-170 594.3
Clacu06g0532 . 19 514 Antiporters AT5G55470 58.9 1.1e-166 583.6
Clacu09g0632 . 88 595 Antiporters AT5G55470 55.6 6.1e-154 541.2
Clacu03g1685 . 10 535 Antiporters AT3G05030 78.9 4.6e-237 817.4
Clacu06g0532 . 22 527 Antiporters AT3G05030 75.6 4.9e-223 770.8
Clacu09g0632 . 102 609 Antiporters AT3G05030 70.2 1.6e-205 712.6
Clacu09g2119 . 12 517 Antiporters AT3G05030 59.6 2.6e-168 589.0
Clacu07g1288 . 102 667 Antiporters AT1G15460 70.4 1.7e-229 792.3
Clacu01g0519 . 104 674 Antiporters AT1G15460 69.5 1.2e-227 786.2
Clacu08g1464 . 152 696 Antiporters AT1G15460 65.8 2.0e-211 732.3
Clacu10g1172 . 102 645 Antiporters AT1G15460 59.2 5.4e-180 627.9
Clacu01g1368 . 102 644 Antiporters AT1G15460 57.2 8.1e-176 614.0
Clacu10g1172 . 3 709 Antiporters AT3G06450 69.8 7.9e-293 1003.0
Clacu01g1368 . 3 713 Antiporters AT3G06450 68.3 2.6e-280 961.4
Clacu01g0519 . 10 657 Antiporters AT3G06450 55.6 1.0e-215 746.9
Clacu07g1288 . 6 647 Antiporters AT3G06450 56.2 3.9e-215 745.0
Clacu08g1464 . 56 695 Antiporters AT3G06450 55.9 5.0e-215 744.6
Clacu10g1172 . 1 716 Antiporters AT2G47160 79.1 0.0e+00 1153.3
Clacu01g1368 . 1 670 Antiporters AT2G47160 74.5 2.9e-303 1037.7
Clacu07g1288 . 1 647 Antiporters AT2G47160 56.5 2.9e-215 745.3
Clacu08g1464 . 57 699 Antiporters AT2G47160 56.8 6.6e-215 744.2
Clacu01g0519 . 10 657 Antiporters AT2G47160 56.7 1.5e-214 743.0
Clacu07g1288 . 1 667 Antiporters AT1G74810 69.6 2.1e-276 948.3
Clacu01g0519 . 10 678 Antiporters AT1G74810 69.3 1.1e-272 936.0
Clacu08g1464 . 57 694 Antiporters AT1G74810 66.5 6.9e-251 863.6
Clacu10g1172 . 7 645 Antiporters AT1G74810 59.8 4.1e-219 758.1
Clacu01g1368 . 7 648 Antiporters AT1G74810 58.2 2.5e-216 748.8
Clacu10g1172 . 1 708 Antiporters AT3G62270 81.5 0.0e+00 1156.7
Clacu01g1368 . 1 705 Antiporters AT3G62270 75.2 2.2e-308 1054.7
Clacu08g1464 . 57 727 Antiporters AT3G62270 56.2 1.2e-221 766.5
Clacu07g1288 . 1 647 Antiporters AT3G62270 58.0 1.0e-217 753.4
Clacu01g0519 . 10 657 Antiporters AT3G62270 58.6 1.8e-217 752.7
Clacu08g1464 . 57 694 Antiporters AT4G32510 69.2 2.8e-260 894.8
Clacu07g1288 . 1 664 Antiporters AT4G32510 65.4 8.4e-257 883.2
Clacu01g0519 . 2 674 Antiporters AT4G32510 64.9 6.0e-255 877.1
Clacu10g1172 . 1 645 Antiporters AT4G32510 55.1 1.0e-206 716.8
Clacu01g1368 . 1 644 Antiporters AT4G32510 54.1 1.1e-205 713.4
Clacu08g1464 . 57 701 Antiporters AT5G25430 70.1 1.9e-261 898.7
Clacu07g1288 . 7 664 Antiporters AT5G25430 65.6 1.7e-246 849.0
Clacu01g0519 . 10 674 Antiporters AT5G25430 64.7 7.3e-245 843.6
Clacu10g1172 . 7 645 Antiporters AT5G25430 56.2 6.7e-206 714.1
Clacu01g1368 . 7 656 Antiporters AT5G25430 54.4 1.0e-201 700.3
Clacu01g0689 . 27 1145 Antiporters AT2G01980 66.3 0.0e+00 1385.9
Clacu01g0689 . 20 738 Antiporters AT1G14660 66.1 1.5e-272 935.6
Clacu08g1856 . 51 576 Antiporters AT5G11800 84.8 1.8e-239 825.5
Clacu03g1608 . 19 587 Antiporters AT5G11800 75.3 1.8e-223 772.3
Clacu05g0891 . 57 563 Antiporters AT5G11800 69.9 2.1e-187 652.5
Clacu05g0891 . 31 565 Antiporters AT5G51710 82.6 3.7e-242 834.3
Clacu08g1856 . 49 558 Antiporters AT5G51710 70.0 3.1e-188 655.2
Clacu03g1608 . 51 560 Antiporters AT5G51710 68.6 8.8e-183 637.1
Clacu08g1856 . 42 572 Antiporters AT2G19600 81.6 5.3e-231 797.3
Clacu03g1608 . 39 584 Antiporters AT2G19600 80.9 8.5e-229 790.0
Clacu05g0891 . 32 563 Antiporters AT2G19600 67.3 4.6e-182 634.8
Clacu05g1183 . 148 563 Antiporters AT1G49810 76.6 1.8e-177 619.0
Clacu05g1183 . 1 581 Antiporters AT3G19490 76.5 2.5e-246 848.2
Clacu02g2370 . 83 569 Antiporters AT5G12860 89.9 1.1e-251 865.9
Clacu10g0944 . 83 577 Antiporters AT5G64280 67.3 1.5e-195 679.5
Clacu10g0944 . 1 577 Antiporters AT5G64290 70.3 6.0e-216 747.3
Clacu07g0235 . 3 379 Antiporters AT4G28390 81.0 3.2e-173 604.7
Clacu08g1764 . 388 768 Antiporters AT4G28390 74.0 1.6e-156 549.3
Clacu04g1216 . 5 307 Antiporters AT4G28390 63.2 4.3e-109 391.7
Clacu08g1764 . 386 769 Antiporters AT3G08580 79.1 1.7e-169 592.4
Clacu07g0235 . 1 378 Antiporters AT3G08580 72.0 8.6e-150 526.9
Clacu04g1216 . 7 307 Antiporters AT3G08580 57.6 5.0e-97 351.7
Clacu08g1764 . 386 769 Antiporters AT5G13490 82.4 5.2e-179 624.0
Clacu07g0235 . 8 378 Antiporters AT5G13490 79.0 5.8e-162 567.4
Clacu04g1216 . 8 307 Antiporters AT5G13490 61.5 5.9e-106 381.3
Clacu04g1216 . 4 301 Antiporters AT5G17400 80.2 2.1e-138 488.8
Clacu07g0235 . 79 365 Antiporters AT5G17400 64.5 1.2e-109 393.3
Clacu08g1764 . 469 760 Antiporters AT5G17400 63.0 5.0e-108 387.9
Clacu03g1723 . 4 542 Antiporters AT1G08960 65.6 2.6e-184 642.1
Clacu10g1575 . 32 556 Antiporters AT5G17850 52.8 6.3e-149 524.6
Clacu10g1093 . 1 533 Antiporters AT2G47600 71.1 1.2e-210 729.6
Clacu07g1308 . 1 300 Antiporters AT1G79900 68.4 1.7e-116 416.0
Clacu09g0209 . 1 304 Antiporters AT1G79900 68.2 2.8e-116 415.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000498 3 6 4 4 3 3 3 3 3 3 3 3 3 3 3 4 3 3 4 3 2 3 3 3 2 3 3 9 16 2 113