Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0399 ATGTGTGAGCTTTCAAAAGAAAGTGAATTAAGAAACTTAGAGAGGATAAATAAGCATTTCTGCGCTCAAAAACCTACAAAATTTGTTCCTGTTCTGTTCCGTTGTCTCGGGGTAGCCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGGCAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1386 41.92 MCELSKESELRNLERINKHFCAQKPTKFVPVLFRCLGVADRRQPKLPFWFLPLQAKSSRKFCDPEFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5040621 5046372 + ClG42_10g0039900.10 Clacu10g0399 259023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0399 461 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 449 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Clacu10g0399 461 FunFam Vacuolar cation/proton exchanger 141 280 - -
Clacu10g0399 461 Pfam Sodium/calcium exchanger protein 301 443 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0399 461 Pfam Sodium/calcium exchanger protein 112 267 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g0399 461 FunFam Vacuolar cation/proton exchanger 289 445 - -
Clacu10g0399 461 NCBIfam calcium/proton exchanger 94 444 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu10g0399 461 Gene3D - 288 445 IPR044880 -
Clacu10g0399 461 Gene3D - 141 283 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1083 Clacu-Chr2:20252311 Clacu10g0399 Clacu-Chr10:5040621 2.60E-158 dispersed
Clacu03g0077 Clacu-Chr3:955976 Clacu10g0399 Clacu-Chr10:5040621 1.60E-85 dispersed
Clacu07g1423 Clacu-Chr7:28997858 Clacu10g0399 Clacu-Chr10:5040621 1.10E-152 dispersed
Clacu10g0399 Clacu-Chr10:5040621 Clacu10g2169 Clacu-Chr10:34830172 5.80E-92 dispersed
Clacu10g0399 Clacu-Chr10:5040621 Clacu04g0759 Clacu-Chr4:21896479 3.60E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0399 K07300 - csv:101205761 644.81