Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0402 ATGGCTTCCACGGCAGAGGACACAACAATCACTTCTTCCAACGATGCCGCCACCGCCGAAGAACAACACTATGCTTATGCTATGCAACTGGCTACCTTATCGGTGGTGCCGATGACACTCCAAGCAGCCTTCGAGCTCGGCGTGTTTGAGATCTTGGCCAAGGCCGGGAACGGGGCCGAGCTCTCTCCGACAGAGATAGCAGCCGAGATAACCACGAAAAACCCCGAAGCGGCGGCGAAGATTGATCGGATGTTGAGGCTTCTAGCGAGCCACTCGGTGGTGGGATGCTCTTTGGCCTTTGATGAAGATGGGAATGTGCAAAGAGTTTATAGCCTTACGCCGGTTTCAAAGAGTGAGCTGAAGAATGCAATTATTGGAGGAGGAGGTGTTTTCAGTAGGGCTTATGGGGGAGTTCATGCCTTTGAATACCTTGGTTTGGATCCAAGATTTAACCAAATTTTCAACACTGCAATGATAAATCACACCACTATGCCCATCAAAAAAATTGTTGAATCCTACAAAGGCTTTGCAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAGTCATCACTTCTACCTATCCTTCTATTAAAGCCATCAACTTCGACTTACCTCATGTCATTCGTGATGCCCCTCCCTACTCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGATGATCATTGTATAAAGTTGTTGAAAAATTGCTACGATGCGATCCCAAATGATGGAAAGGTAATCATAGTGGACTCGATACTTCCAACATTGCCTGAGACCACAAGTGCAACAAAAGCCGTGGCCAATGCGATATGGTTGAGATGA 897 46.82 MASTAEDTTITSSNDAATAEEQHYAYAMQLATLSVVPMTLQAAFELGVFEILAKAGNGAELSPTEIAAEITTKNPEAAAKIDRMLRLLASHSVVGCSLAFDEDGNVQRVYSLTPVSKSELKNAIIGGGGVFSRAYGGVHAFEYLGLDPRFNQIFNTAMINHTTMPIKKIVESYKGFANIKQLVDVGGGLGVTLQVITSTYPSIKAINFDLPHVIRDAPPYSGVEHVGGDMFEKVPNGDAVFMKWILHDWSDDHCIKLLKNCYDAIPNDGKVIIVDSILPTLPETTSATKAVANAIWLR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5091817 5094477 - ClG42_10g0040200.10 Clacu10g0402 259026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0402 298 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 298 IPR016461 GO:0008168(InterPro)
Clacu10g0402 298 Gene3D Vaccinia Virus protein VP39 151 293 IPR029063 -
Clacu10g0402 298 FunFam Caffeic acid 3-O-methyltransferase 3 118 - -
Clacu10g0402 298 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 287 IPR029063 -
Clacu10g0402 298 Gene3D - 35 169 IPR036388 -
Clacu10g0402 298 Pfam Dimerisation domain 38 89 IPR012967 GO:0046983(InterPro)
Clacu10g0402 298 SUPERFAMILY Winged helix DNA-binding domain 19 117 IPR036390 -
Clacu10g0402 298 Pfam O-methyltransferase domain 119 291 IPR001077 GO:0008171(InterPro)
Clacu10g0402 298 PANTHER O-METHYLTRANSFERASE 23 289 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Clacu10g0402 298 PIRSF O-mtase 5 124 IPR016461 GO:0008168(InterPro)
Clacu10g0402 298 PIRSF O-mtase 117 297 IPR016461 GO:0008168(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0402 Clacu-Chr10:5091817 Clacu10g1300 Clacu-Chr10:25948403 2.20E-23 dispersed
Clacu10g0402 Clacu-Chr10:5091817 Clacu10g0403 Clacu-Chr10:5108521 2.20E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0402 K13066 - csv:101214675 468.388