Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0403 ATGACTACCACGGCGGAGGAAACAACCATCACTTTCTCCTCCGATCATGGCGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAGCTGGTTACCTCATCGGTGCTGCCAATGACACTCCAAGCAGCGTTCGAGCTCGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAAGCTCTCTCCGCCAGAGATAGCGGCTGAGATAACTACGACAAACCCGGATGCAGCGTCGATGATTGATCGGATGTTGAGGCTTCTCGCCAGCCACTCGGTGGTGGGATGCTCTGTGGGATTTGATGAAGATGGGAAAATGCAGAGACTTTATAGCCTTACCCCAGTTTCTAAGTATTATGTTCGTAATCAAGATGGTGTCTCGTTGGGTCCAACTTTGTCGTTGATTCAAGATAAAGTCTTTCTCCATAGCTGGAGTGAGCTAAAGAATGCAGTTATTGAAGGAGGAGTTCCTTTCAATAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTTTTCAATGCTGCAATGATAAATCACACCACTATAGCCATCAAGAAAATTGTCAAATCCTACAAAGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAATCATCACTTCTACATACCCTTCCATCAAAGCCATCAACTTCGACTTACCTCATGTCATTCGCGATGCCCCTCCCTATCCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGCATTGTGTAAAGTTATTGAAAAATTGCTACGTTGCGATCCCAAATGAAGGAAAGGTAATCATAGTGGATTCAGTGGTTCCAACAATACTTGAAACCACAGATGTAACAAAATGCATTGCCCAATGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAGCGAACTCGAGATGAATTCGAGGCCCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAGTGCTTTGTGTCTAATCTCTGGGTTATAGAGTTTCTTAAAAATTAA 1113 45.19 MTTTAEETTITFSSDHGAAQEQQHYAYAMQLVTSSVLPMTLQAAFELGVFEILAKAGDGAKLSPPEIAAEITTTNPDAASMIDRMLRLLASHSVVGCSVGFDEDGKMQRLYSLTPVSKYYVRNQDGVSLGPTLSLIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNAAMINHTTIAIKKIVKSYKGFENIKQLVDVGGGLGVTLQIITSTYPSIKAINFDLPHVIRDAPPYPGVEHVGGDMFEKVPNGDAVFMKWILHDWSDEHCVKLLKNCYVAIPNEGKVIIVDSVVPTILETTDVTKCIAQCDVLMMTQNPGGKERTRDEFEALATKAGFKHVIFQCFVSNLWVIEFLKN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5108521 5111186 - ClG42_10g0040300.10 Clacu10g0403 259027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0403 370 Gene3D - 6 120 IPR036388 -
Clacu10g0403 370 SUPERFAMILY Winged helix DNA-binding domain 20 123 IPR036390 -
Clacu10g0403 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168(InterPro)
Clacu10g0403 370 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983(InterPro)
Clacu10g0403 370 PIRSF O-mtase 6 369 IPR016461 GO:0008168(InterPro)
Clacu10g0403 370 FunFam Caffeic acid O-methyltransferase 121 369 - -
Clacu10g0403 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 367 IPR029063 -
Clacu10g0403 370 FunFam Caffeic acid 3-O-methyltransferase 5 120 - -
Clacu10g0403 370 Gene3D Vaccinia Virus protein VP39 121 369 IPR029063 -
Clacu10g0403 370 PANTHER O-METHYLTRANSFERASE 24 356 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Clacu10g0403 370 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1741 Clacu-Chr7:32103587 Clacu10g0403 Clacu-Chr10:5108521 2.40E-114 dispersed
Clacu10g0403 Clacu-Chr10:5108521 Clacu10g1300 Clacu-Chr10:25948403 2.10E-31 dispersed
Clacu10g0402 Clacu-Chr10:5091817 Clacu10g0403 Clacu-Chr10:5108521 2.20E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0403 K13066 - csv:101214916 590.497