Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0408 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.63 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5163115 5163642 + ClG42_10g0040800.10 Clacu10g0408 259032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0408 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Clacu10g0408 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Clacu10g0408 175 MobiDBLite consensus disorder prediction 118 175 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Clacu10g0408 175 MobiDBLite consensus disorder prediction 118 134 - -
Clacu10g0408 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Clacu10g0408 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Clacu10g0408 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Clacu10g0408 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0408 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0408 K08065 - - csv:101204640 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0930 Clacu-Chr7:23239577 Clacu10g0408 Clacu-Chr10:5163115 1.70E-41 dispersed
Clacu09g0607 Clacu-Chr9:5200359 Clacu10g0408 Clacu-Chr10:5163115 1.30E-38 dispersed
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g0427 Clacu-Chr10:5333612 2.60E-32 dispersed
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g2029 Clacu-Chr10:33755927 2.90E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g673 . . . . . . . . . Cmo06g00682 . . . . . . . . . . . . . . Cla10g00404 Cam10g0401 Cec10g0423 Cco10g0413 Clacu10g0408 Cmu10g1240 Cre10g0657 . . Cone14ag1222 Cone15ag1295 . Csa03g00425 . Cme06g02755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00494 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0427 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.0e-49 190.7
Clacu02g0948 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.1e-38 154.5
Clacu10g0427 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Clacu07g0930 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Clacu02g0948 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Clacu10g0408 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.3e-50 194.5
Clacu07g0930 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Clacu10g2029 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.2e-45 177.9
Clacu02g1419 . 820 938 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Clacu09g0607 . 45 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Clacu02g1419 . 807 923 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Clacu10g2029 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Clacu02g0948 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Clacu07g0930 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Clacu10g0408 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.5e-41 164.9
Clacu09g0607 . 41 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Clacu09g0607 . 43 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Clacu02g0948 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.8e-39 157.5
Clacu07g0930 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Clacu10g2029 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 9.2e-37 150.2
Clacu10g2029 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 2.1e-63 238.8
Clacu02g1419 . 813 972 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.6e-55 211.5
Clacu02g0948 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Clacu07g0930 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.5e-40 162.2
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Clacu07g0930 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Clacu02g0948 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Clacu10g2029 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.1e-44 174.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.3e-41 164.1
Clacu02g1419 . 833 927 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Clacu09g0607 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.5e-39 158.3
Clacu02g0948 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Clacu10g0408 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.9e-49 192.6
Clacu07g0930 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Clacu10g2029 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 7.1e-44 174.1
Clacu02g1419 . 833 943 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Clacu09g0607 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Clacu10g2029 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.9 8.5e-60 226.9
Clacu02g1419 . 818 971 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.7e-55 211.5
Clacu02g0948 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.2e-41 164.5
Clacu07g0930 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48452 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Clacu TF