Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0408 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.63 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5163115 5163642 + ClG42_10g0040800.10 Clacu10g0408 259032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0408 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Clacu10g0408 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Clacu10g0408 175 MobiDBLite consensus disorder prediction 118 175 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Clacu10g0408 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Clacu10g0408 175 MobiDBLite consensus disorder prediction 118 134 - -
Clacu10g0408 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Clacu10g0408 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Clacu10g0408 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Clacu10g0408 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0408 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0930 Clacu-Chr7:23239577 Clacu10g0408 Clacu-Chr10:5163115 1.70E-41 dispersed
Clacu09g0607 Clacu-Chr9:5200359 Clacu10g0408 Clacu-Chr10:5163115 1.30E-38 dispersed
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g0427 Clacu-Chr10:5333612 2.60E-32 dispersed
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g2029 Clacu-Chr10:33755927 2.90E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48452 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0408 K08065 - csv:101204640 308.531