Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0424 ATGACCCCAAAAAATCTCCTTGTTTTTTCCCTTTTCCTGTTTCTCTTCACTCCTCCAAGAACTGAGTGTATTGGCTTCGATTTCAGTTCTTTCAACATCAGAAACCTCACTCTCCTCGGCGATTCCCACCTCCGCGATGGCGTTATCGGCCTCACCAAAGAGCTCGGAGTTCCTTCCTCGAGCGCCGGCGCCGTAATTTACAACAATCCAATCGGATTCTACGACGCCGATGCCAACATCACTGCCTCCTTCTCTACAAGATTCTCTTTCTCCATCACCAACATTAACCCCACTTCCTCCGGCGATGGCCTTTCCTTTTTCCTCTCCCCCGATAACCAAACCCTCGGCAGCCCCGGTGGGTATTTGGGTCTCGTCAATTCTTCCCAATTGACCAAGAACAAGTTTCTGGCGGTTGAATTTGATACACGGCTTGATTCTGTCTTCAACGATCCTAATGCCCACCATGTTGGCTTCGACATTGAGAGCTTGATTTCGATCAAGACGGCTAACCCTGCTTCTCAAGGTGTAAATCTCAAGAGTGGGAAGTCGATTACGGCTTGGATTGAGTACAAGAATGAGGAAAATAGGCTGAGGGTCTTCTTGAGTAATTCTGGTTTGAAACCTTCCAAGGCGCTTCTCGACCTCGGTGTCGATCTTTCGAACTATCTTAAGGAGGTTATGTATGTCGGGTTTTCCGGTTCGACTGAAGGGAGTACTGAGCTTCATTTGATTGAGAGTTGGAGTTTTAATACTTCTGGGTTTGTACCTGCTAGGCCTAGATTTAACCCTCATAATGTTTCTGATAGCTCTGTGATTGTCTCACCTAATATTTCTATATCTGATTCTGGTAATGCTCATCACAATAGACTCGGGTTGGGTCTCGGGATCGCCGGGCCGGCTTTCTTTTGTGCCGTGATTGTTGTGTTTGGTTTCTTTTCACTTGAGAAATGGAGAAAGATTAGGGCTCAGAAAAGCATAAAGGCAGAGCTTTTGACAGGTCCAAGAGAGTTTAGTTATAGAGAACTAAAGACGGCCACAAAAGGATTTCATTCCAGTAGGATCGTTGGCAATGGGGCTTTTGGGACAGTCTATAAAGCTTTTTTCATCTCATCCGGAACCATTTCTGCGGTTAAAAGATCGAAGCATTCTCACGAAGGGAAGACCGAGTTCCTAGCCGAGTTGTCGATCATAGCTCGGTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGCGTTGAGAAAGGTGAATTGCTTCTCGTTTATGACTTTATGCCGAACGGGAGCCTTGATAGGCTGCTTTACCAAGAATCTGGAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAATGTTGCTGTTGGATTGGCATCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAAGTCATCCACAGAGATATAAAGACGGGTAACGTACTGCTGGACGGGAACTTCAATGCAAGATTGGGCGATTTTGGATTGGCGAAGCTCATGGATCATGACAAGAGCCCGGTTTCGACTCTAACTGCAGGAACAATGGGATACCTTGCACCTGAGTATCTTCAATATGGGAAAGCGACTGAGAAAACTGACGTCTTCAGCTATGGAGTGGTTATCCTTGAAGTGACGTGTGGGAGGAGGCCGATTGAAAGAGAACCAGGTACTCAAAAGATGGTCAATCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATTGAAGCAGCTGATAAAAGGTTGAACGGAGAGTTCAGGGAAGAAGAAATGAGGAAGCTCTTACTTGTCGGACTGAGCTGTGCAAACCCGGATAGCTCGGCAAGACCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGGCAGAGCCAGTGTTCGTACCAAAAATGAAGCCTAGTCTTACATTTTCTTGTGGCTTTTCACTGACTGTGGATGACATTATAATAGAGGAAGAAAGTGGAGGAAAGTGGGAATCTTCAAAGACAACCATTGTCCAAATAGACTGA 2016 45.88 MTPKNLLVFSLFLFLFTPPRTECIGFDFSSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGAVIYNNPIGFYDADANITASFSTRFSFSITNINPTSSGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFLAVEFDTRLDSVFNDPNAHHVGFDIESLISIKTANPASQGVNLKSGKSITAWIEYKNEENRLRVFLSNSGLKPSKALLDLGVDLSNYLKEVMYVGFSGSTEGSTELHLIESWSFNTSGFVPARPRFNPHNVSDSSVIVSPNISISDSGNAHHNRLGLGLGIAGPAFFCAVIVVFGFFSLEKWRKIRAQKSIKAELLTGPREFSYRELKTATKGFHSSRIVGNGAFGTVYKAFFISSGTISAVKRSKHSHEGKTEFLAELSIIARLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDRLLYQESGEASLLNWSHRYNVAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVTCGRRPIEREPGTQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFREEEMRKLLLVGLSCANPDSSARPSMRKVLQILNNEAEPVFVPKMKPSLTFSCGFSLTVDDIIIEEESGGKWESSKTTIVQID 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5314857 5316872 - ClG42_10g0042400.10 Clacu10g0424 259048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0424 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 257 IPR013320 -
Clacu10g0424 671 PANTHER - 38 631 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Clacu10g0424 671 Gene3D - 22 258 - -
Clacu10g0424 671 Pfam Legume lectin domain 25 256 IPR001220 GO:0030246(InterPro)
Clacu10g0424 671 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524(InterPro)
Clacu10g0424 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 425 639 - -
Clacu10g0424 671 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246(InterPro)
Clacu10g0424 671 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Clacu10g0424 671 SUPERFAMILY Protein kinase-like (PK-like) 332 643 IPR011009 -
Clacu10g0424 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 313 424 - -
Clacu10g0424 671 FunFam L-type lectin-domain containing receptor kinase VIII.1 22 262 - -
Clacu10g0424 671 Gene3D Transferase(Phosphotransferase) domain 1 425 640 - -
Clacu10g0424 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0424 671 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Clacu10g0424 671 SMART serkin_6 349 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0424 671 Pfam Protein kinase domain 349 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0424 671 CDD STKc_IRAK 355 623 - -
Clacu10g0424 671 ProSiteProfiles Protein kinase domain profile. 349 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0811 Clacu-Chr8:18157808 Clacu10g0424 Clacu-Chr10:5314857 1.50E-128 dispersed
Clacu10g0424 Clacu-Chr10:5314857 Clacu10g2014 Clacu-Chr10:33622348 2.80E-172 dispersed
Clacu10g0424 Clacu-Chr10:5314857 Clacu10g2102 Clacu-Chr10:34303683 9.90E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73864 PF00069 Pkinase 5.50E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0424 - - - 0.0