Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0427 | ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTTTGATGATGGTGGTGGCGGCTGGCTGGCTGGCTGTGGCTTGTGTGGCTGCAAGATAG | 759 | 55.2 | MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGLMMVVAAGWLAVACVAAR | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5333612 | 5336692 | + | ClG42_10g0042700.10 | Clacu10g0427 | 259051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0427 | 252 | Gene3D | Histone, subunit A | 74 | 188 | IPR009072 | GO:0046982(InterPro) | |
Clacu10g0427 | 252 | MobiDBLite | consensus disorder prediction | 22 | 77 | - | - | |
Clacu10g0427 | 252 | FunFam | Nuclear transcription factor Y subunit B-6 | 76 | 188 | - | - | |
Clacu10g0427 | 252 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 118 | 134 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu10g0427 | 252 | PRINTS | CCAAT-binding transcription factor subunit A signature | 134 | 152 | - | - | |
Clacu10g0427 | 252 | PRINTS | CCAAT-binding transcription factor subunit A signature | 153 | 171 | - | - | |
Clacu10g0427 | 252 | PRINTS | CCAAT-binding transcription factor subunit A signature | 115 | 133 | - | - | |
Clacu10g0427 | 252 | SUPERFAMILY | Histone-fold | 84 | 177 | IPR009072 | GO:0046982(InterPro) | |
Clacu10g0427 | 252 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Clacu10g0427 | 252 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 88 | 151 | IPR003958 | - | |
Clacu10g0427 | 252 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 70 | 177 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g0408 | Clacu-Chr10:5163115 | Clacu10g0427 | Clacu-Chr10:5333612 | 2.60E-32 | dispersed | |
Clacu10g0427 | Clacu-Chr10:5333612 | Clacu10g2029 | Clacu-Chr10:33755927 | 1.00E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48453 | PF00808 | CBFD_NFYB_HMF | 3.40E-25 | CL0012 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0427 | K08065 | - | csv:116402762 | 374.015 |