Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0427 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTTTGATGATGGTGGTGGCGGCTGGCTGGCTGGCTGTGGCTTGTGTGGCTGCAAGATAG 759 55.2 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGLMMVVAAGWLAVACVAAR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5333612 5336692 + ClG42_10g0042700.10 Clacu10g0427 259051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0427 252 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982(InterPro)
Clacu10g0427 252 MobiDBLite consensus disorder prediction 22 77 - -
Clacu10g0427 252 FunFam Nuclear transcription factor Y subunit B-6 76 188 - -
Clacu10g0427 252 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Clacu10g0427 252 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982(InterPro)
Clacu10g0427 252 MobiDBLite consensus disorder prediction 1 77 - -
Clacu10g0427 252 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Clacu10g0427 252 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 70 177 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g0427 Clacu-Chr10:5333612 2.60E-32 dispersed
Clacu10g0427 Clacu-Chr10:5333612 Clacu10g2029 Clacu-Chr10:33755927 1.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48453 PF00808 CBFD_NFYB_HMF 3.40E-25 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0427 K08065 - csv:116402762 374.015