Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0427 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTTTGATGATGGTGGTGGCGGCTGGCTGGCTGGCTGTGGCTTGTGTGGCTGCAAGATAG 759 55.2 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGLMMVVAAGWLAVACVAAR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5333612 5336692 + ClG42_10g0042700.10 Clacu10g0427 259051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0427 252 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982(InterPro)
Clacu10g0427 252 MobiDBLite consensus disorder prediction 22 77 - -
Clacu10g0427 252 FunFam Nuclear transcription factor Y subunit B-6 76 188 - -
Clacu10g0427 252 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
Clacu10g0427 252 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Clacu10g0427 252 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982(InterPro)
Clacu10g0427 252 MobiDBLite consensus disorder prediction 1 77 - -
Clacu10g0427 252 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Clacu10g0427 252 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 70 177 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0427 K08065 - - csv:116402762 374.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0408 Clacu-Chr10:5163115 Clacu10g0427 Clacu-Chr10:5333612 2.60E-32 dispersed
Clacu10g0427 Clacu-Chr10:5333612 Clacu10g2029 Clacu-Chr10:33755927 1.00E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0427 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.0e-49 190.7
Clacu02g0948 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.1e-38 154.5
Clacu10g0427 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Clacu07g0930 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Clacu02g0948 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Clacu10g0408 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.3e-50 194.5
Clacu07g0930 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Clacu10g2029 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.2e-45 177.9
Clacu02g1419 . 820 938 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Clacu09g0607 . 45 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Clacu02g1419 . 807 923 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Clacu10g2029 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Clacu02g0948 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Clacu07g0930 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Clacu10g0408 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.5e-41 164.9
Clacu09g0607 . 41 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Clacu09g0607 . 43 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Clacu02g0948 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.8e-39 157.5
Clacu07g0930 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Clacu10g2029 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 9.2e-37 150.2
Clacu10g2029 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 2.1e-63 238.8
Clacu02g1419 . 813 972 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.6e-55 211.5
Clacu02g0948 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Clacu07g0930 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.5e-40 162.2
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Clacu07g0930 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Clacu02g0948 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Clacu10g2029 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.1e-44 174.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.3e-41 164.1
Clacu02g1419 . 833 927 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Clacu09g0607 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.5e-39 158.3
Clacu02g0948 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Clacu10g0408 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.9e-49 192.6
Clacu07g0930 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Clacu10g2029 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 7.1e-44 174.1
Clacu02g1419 . 833 943 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Clacu09g0607 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Clacu10g2029 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.9 8.5e-60 226.9
Clacu02g1419 . 818 971 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.7e-55 211.5
Clacu02g0948 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.2e-41 164.5
Clacu07g0930 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48453 PF00808 CBFD_NFYB_HMF 3.40E-25 CL0012 Clacu TF