Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0435 ATGCATATGGAGTTTTCGGATTACACAAGAGTTGTATTCCATCGAATTAGTAAGATAGATCCAGATAATGTGAAGAAGATCATTGGATTTTTGCTTCTCCATGATCATGGTGATCAAGAAATGGCTAGATTAGCACTAGCACCTGAAAGCCATATCCAAGAAGTTGTTATGCTAGCCAAGACCGAGCTGCATCAACTGCGATCGATGCCGGCTCCGTTGTCACCCCCGTCCCCGTCTCAAGGAGGTTTCATTCCATTCTCCATTAGAACCAGGCAGTTTTCAACTTCCCCTCCAAGTTGGGAGCAACAACAGCTTACTAACAAACCTACTCCTGATTACATACCACTAGGCTACCCTGATTCTATGTATGAATTACAAAATCCAGCTCAATTCTTTTGTTTAGACGACCATATCGACCCCTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATGTGCTCAACGGCTTTAGTACTAGGAACACCCGCCATTACTCGAACGTGCCGGAGTTTCAGCCTAGGATATGTCACTACTACAACAAAGGATTTTGCAAGCATGGCAATAGTTGTAGGTATCTTCATAGCAACCTCGTGCCTGGGAGCCTTCCTCAGATGTATAATAGCCATTCTAATGATGATCATGTTTTTCGACCCGGTTCGCTCGAGAGGTTGGAGTTTGAAATTGTTGATCTTCTTAAATCTAGAAGAGGCAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGAAAAGTTCTTCAAGCAGAAGGATACCTAACTGAGAGCCAGAGGCATGGTAAATCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAAAACAGCATTCAAGTCATTGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCAAAATTCATGGACCATAGGAAGGATAAGAATGACCCCGGACCGATTGTTAGCAGCGCCCGACAGATATATATGACATTTCCAGCTGACAGCACCTTCACAGAAGATGATGTTTCTGATTACTTCAGTGTCCACTATGGACTGGTTGAAGATGTAAGGATACCTTGCCAACAAAGAAGGATGTTCGGCTTCGTGACCTTCCACAGTATCGAGACTGTGAAACTAATCTTGTCCAATGACAGCGAGCATTTAATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAGAAGTCCAAGCTATTGGAAAGGAAGTACCATGAAAGAATTGAACAGCAACAGCAAGATTATTTTTCCTCACACTATAACAACCTCGAATCTGAGCAGCTTCACTCGATTCCAAGAGGCTATGATTTTTCCTCAACAATGCTGAGGCTAAGGATGGGAGAGCAGCAGCAGCAGCAACAACAACAACAATGTGCACTCGAGAGGAGCCTTTCCAGGATGACCTTAATTCAGAAATCCGTCGTGAATCAGCCCTACTTTAGCTATCAGATGAATGAACTGAAACTTCCAGTTCCAGAAGCTACCGAAAGGTTTGATCATCTGATGGATATTCTGAATGTTCTGAAAAGTGGATCTGGCTCTAGCTCGAGCTCGAGCTCTATAACTGATGATAACAAGCCACCCCGAAACGTGACGGATTGGAATCACATCGAACTGAACAACCTGCAGAGTGAAGGATATAATCTCCCAGAAAGTCCATTTGAATCTTCAACAGGAAACAACACATAG 1719 43.69 MHMEFSDYTRVVFHRISKIDPDNVKKIIGFLLLHDHGDQEMARLALAPESHIQEVVMLAKTELHQLRSMPAPLSPPSPSQGGFIPFSIRTRQFSTSPPSWEQQQLTNKPTPDYIPLGYPDSMYELQNPAQFFCLDDHIDPSNSGLSSFDCSYAENVLNGFSTRNTRHYSNVPEFQPRICHYYNKGFCKHGNSCRYLHSNLVPGSLPQMYNSHSNDDHVFRPGSLERLEFEIVDLLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKNSIQVIDRPHGQHAVILAEDAPKFMDHRKDKNDPGPIVSSARQIYMTFPADSTFTEDDVSDYFSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSNDSEHLICGARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSSTMLRLRMGEQQQQQQQQQCALERSLSRMTLIQKSVVNQPYFSYQMNELKLPVPEATERFDHLMDILNVLKSGSGSSSSSSSITDDNKPPRNVTDWNHIELNNLQSEGYNLPESPFESSTGNNT 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5424425 5426643 + ClG42_10g0043500.10 Clacu10g0435 259059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0435 572 ProSiteProfiles OST-type HTH domain profile. 223 306 IPR025605 -
Clacu10g0435 572 Gene3D - 336 409 IPR012677 -
Clacu10g0435 572 SUPERFAMILY CCCH zinc finger 176 198 IPR036855 GO:0046872(InterPro)
Clacu10g0435 572 Pfam RNA recognition motif 340 386 IPR000504 GO:0003723(InterPro)
Clacu10g0435 572 SUPERFAMILY RNA-binding domain, RBD 340 430 IPR035979 GO:0003676(InterPro)
Clacu10g0435 572 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 198 IPR000571 GO:0046872(InterPro)
Clacu10g0435 572 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 3 569 - -
Clacu10g0435 572 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872(InterPro)
Clacu10g0435 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 405 IPR000504 GO:0003723(InterPro)
Clacu10g0435 572 Gene3D - 170 244 - -
Clacu10g0435 572 SMART rrm1_1 330 401 IPR000504 GO:0003723(InterPro)
Clacu10g0435 572 SMART c3hfinal6 173 199 IPR000571 GO:0046872(InterPro)
Clacu10g0435 572 MobiDBLite consensus disorder prediction 520 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0435 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1339 Clacu-Chr3:26062457 Clacu10g0435 Clacu-Chr10:5424425 3.50E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65