Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0438 ATGCAGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGTTCCTGTTACTGGCCTCCTATCAACCACGGAGGTGTCTTGTATCCTGACGATGTATACGAACAAAATCACTTACCATCTGAGACTTTCAAACATTCTTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCCTATTATTCTCCCGACAATAATTGTGGCTCACCTGTAAGTAGATCTTGCTTAACAGATGCCACTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACGGAACCAGTTAATCCTGTATTACCTGTGCAAGAAATGGGGTGGAATGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGAAGAAAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATTAAGCGTTTAGGGGCCTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAATTGCTCTCATACATGCATGTTCTCTACGACATTTGCCCTTATTTCAAGTTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTGGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGACGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTTGAGATTGTAGGAAAAAGGTTGACGATTTTGGCAGAGTCATTAAATGTGCCCTTTGAATTCCATGGCATTGCAGGCTCTGCTTCTGAAATTCAACGCGAAGATCTTAAAGTTCAACCAGGTGAAGCGATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGTAGTCAGAATCACCGGGATCGAATTTTGCGGCTGGTCAAGAGTTTGTCTCCAAAAGTCGTGACGGTGGTCGAGCACGAGTCGAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAGTCCATAGATGTGACCCTCCCGAGAGATCACAAAGAGCGGATCAACGTGGAGCAGCACTGTTTAGCCCGGGACATCGTAAATTTAGTAGCATGTGAGGGACCCGAAAGAGTCGAACGCCATGAACTTTTCGGAAAGTGGAGATCACGGCTACTCATGGCTGGGTTTAAGCCACATCCTTTAAGCCCTTTTGTGAATGCTACTATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTCTATATCTTGGTTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 44.93 MQEPSRKKVPNQSHRFYEQPQQEPGSCYWPPINHGGVLYPDDVYEQNHLPSETFKHSCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDATADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEMGWNDVAEIISRRDLKEMLCACARAIEENDMMTGEWLVSELRGMVSVSGEPIKRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYDICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVGKRLTILAESLNVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGPERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5453557 5455194 + ClG42_10g0043800.10 Clacu10g0438 259062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0438 545 MobiDBLite consensus disorder prediction 55 92 - -
Clacu10g0438 545 MobiDBLite consensus disorder prediction 55 95 - -
Clacu10g0438 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu10g0438 545 MobiDBLite consensus disorder prediction 1 31 - -
Clacu10g0438 545 Pfam GRAS domain family 175 544 IPR005202 -
Clacu10g0438 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2009 Clacu-Chr1:32012370 Clacu10g0438 Clacu-Chr10:5453557 2.60E-52 dispersed
Clacu02g0968 Clacu-Chr2:13335426 Clacu10g0438 Clacu-Chr10:5453557 1.20E-167 dispersed
Clacu03g0137 Clacu-Chr3:1501243 Clacu10g0438 Clacu-Chr10:5453557 5.40E-57 dispersed
Clacu05g1649 Clacu-Chr5:24584293 Clacu10g0438 Clacu-Chr10:5453557 7.90E-35 dispersed
Clacu09g0508 Clacu-Chr9:4390348 Clacu10g0438 Clacu-Chr10:5453557 1.30E-24 dispersed
Clacu09g0971 Clacu-Chr9:9155066 Clacu10g0438 Clacu-Chr10:5453557 1.60E-112 dispersed
Clacu10g0438 Clacu-Chr10:5453557 Clacu11g1100 Clacu-Chr11:13857617 1.50E-70 dispersed
Clacu10g0438 Clacu-Chr10:5453557 Clacu10g2088 Clacu-Chr10:34216627 1.50E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48454 PF03514 GRAS 1.40E-129 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0438 K27748 - csv:101220072 1007.28