Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0438 ATGCAGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGTTCCTGTTACTGGCCTCCTATCAACCACGGAGGTGTCTTGTATCCTGACGATGTATACGAACAAAATCACTTACCATCTGAGACTTTCAAACATTCTTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCCTATTATTCTCCCGACAATAATTGTGGCTCACCTGTAAGTAGATCTTGCTTAACAGATGCCACTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACGGAACCAGTTAATCCTGTATTACCTGTGCAAGAAATGGGGTGGAATGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGAAGAAAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATTAAGCGTTTAGGGGCCTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAATTGCTCTCATACATGCATGTTCTCTACGACATTTGCCCTTATTTCAAGTTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTGGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGACGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTTGAGATTGTAGGAAAAAGGTTGACGATTTTGGCAGAGTCATTAAATGTGCCCTTTGAATTCCATGGCATTGCAGGCTCTGCTTCTGAAATTCAACGCGAAGATCTTAAAGTTCAACCAGGTGAAGCGATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGTAGTCAGAATCACCGGGATCGAATTTTGCGGCTGGTCAAGAGTTTGTCTCCAAAAGTCGTGACGGTGGTCGAGCACGAGTCGAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAGTCCATAGATGTGACCCTCCCGAGAGATCACAAAGAGCGGATCAACGTGGAGCAGCACTGTTTAGCCCGGGACATCGTAAATTTAGTAGCATGTGAGGGACCCGAAAGAGTCGAACGCCATGAACTTTTCGGAAAGTGGAGATCACGGCTACTCATGGCTGGGTTTAAGCCACATCCTTTAAGCCCTTTTGTGAATGCTACTATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTCTATATCTTGGTTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 44.93 MQEPSRKKVPNQSHRFYEQPQQEPGSCYWPPINHGGVLYPDDVYEQNHLPSETFKHSCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDATADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEMGWNDVAEIISRRDLKEMLCACARAIEENDMMTGEWLVSELRGMVSVSGEPIKRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYDICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVGKRLTILAESLNVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGPERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5453557 5455194 + ClG42_10g0043800.10 Clacu10g0438 259062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0438 545 MobiDBLite consensus disorder prediction 55 92 - -
Clacu10g0438 545 MobiDBLite consensus disorder prediction 55 95 - -
Clacu10g0438 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu10g0438 545 MobiDBLite consensus disorder prediction 1 31 - -
Clacu10g0438 545 Pfam GRAS domain family 175 544 IPR005202 -
Clacu10g0438 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0438 K27748 - - csv:101220072 1007.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2009 Clacu-Chr1:32012370 Clacu10g0438 Clacu-Chr10:5453557 2.60E-52 dispersed
Clacu02g0968 Clacu-Chr2:13335426 Clacu10g0438 Clacu-Chr10:5453557 1.20E-167 dispersed
Clacu03g0137 Clacu-Chr3:1501243 Clacu10g0438 Clacu-Chr10:5453557 5.40E-57 dispersed
Clacu05g1649 Clacu-Chr5:24584293 Clacu10g0438 Clacu-Chr10:5453557 7.90E-35 dispersed
Clacu09g0508 Clacu-Chr9:4390348 Clacu10g0438 Clacu-Chr10:5453557 1.30E-24 dispersed
Clacu09g0971 Clacu-Chr9:9155066 Clacu10g0438 Clacu-Chr10:5453557 1.60E-112 dispersed
Clacu10g0438 Clacu-Chr10:5453557 Clacu11g1100 Clacu-Chr11:13857617 1.50E-70 dispersed
Clacu10g0438 Clacu-Chr10:5453557 Clacu10g2088 Clacu-Chr10:34216627 1.50E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g614 . . . . Bpe09g00134 . . Bma13g01108 Cmo16g00983 . . . . . . . . . . . . . . . Cla10g00432 Cam10g0430 Cec10g0453 Cco10g0442 Clacu10g0438 Cmu10g1269 Cre10g0686 . . Cone14ag1207 . . Csa03g00440 . Cme06g02786 . Blo10g00862 . Bda12g00952 . . . . Sed08g2939 . . . Cma16g00944 . Car16g00908 Cpe14g00768 . Bhi11g00497 Tan01g1808 Cmetu06g1047 . Hepe06g1230 . . . . . . . . . Lsi05g00522 . Chy06g01877 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g2088 . 74 753 GRAS Transcription Factor Family AT2G37650 54.4 2.9e-199 692.2
Clacu03g0137 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.0e-127 452.6
Clacu01g1813 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.2e-135 479.2
Clacu07g1089 . 36 443 GRAS Transcription Factor Family AT5G41920 65.9 2.5e-147 518.8
Clacu04g0554 . 447 839 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Clacu01g2009 . 1 600 GRAS Transcription Factor Family AT5G66770 56.7 2.7e-171 599.0
Clacu07g0918 . 8 553 GRAS Transcription Factor Family AT5G66770 58.7 4.5e-166 581.6
Clacu10g0438 . 45 544 GRAS Transcription Factor Family AT1G50600 58.3 1.4e-161 566.6
Clacu02g0968 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 7.0e-150 527.7
Clacu01g2210 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.4e-142 503.4
Clacu10g0369 . 1 635 GRAS Transcription Factor Family AT1G63100 50.2 1.2e-162 570.5
Clacu01g0633 . 44 581 GRAS Transcription Factor Family AT1G14920 67.3 4.5e-205 711.1
Clacu03g0853 . 48 599 GRAS Transcription Factor Family AT1G14920 61.3 3.4e-184 641.7
Clacu05g1305 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 4.6e-157 551.6
Clacu10g0353 . 34 401 GRAS Transcription Factor Family AT1G55580 51.9 2.2e-104 376.3
Clacu03g0853 . 48 596 GRAS Transcription Factor Family AT1G66350 60.1 1.9e-176 615.9
Clacu01g0633 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.7e-173 603.6
Clacu05g1305 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 2.9e-161 565.5
Clacu02g2060 . 251 771 GRAS Transcription Factor Family AT1G07520 50.5 6.0e-141 498.0
Clacu02g0968 . 19 518 GRAS Transcription Factor Family AT5G48150 64.0 1.1e-176 616.7
Clacu10g0438 . 17 544 GRAS Transcription Factor Family AT5G48150 59.1 3.8e-174 608.2
Clacu01g2210 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.5e-151 533.1
Clacu05g1649 . 2 112 GRAS Transcription Factor Family AT5G48150 64.0 2.2e-36 150.6
Clacu01g0633 . 46 578 GRAS Transcription Factor Family AT2G01570 68.2 6.0e-211 730.7
Clacu03g0853 . 49 597 GRAS Transcription Factor Family AT2G01570 62.9 2.7e-187 652.1
Clacu05g1305 . 31 555 GRAS Transcription Factor Family AT2G01570 58.2 3.0e-162 568.9
Clacu03g0853 . 48 596 GRAS Transcription Factor Family AT1G66350 60.1 1.9e-176 615.9
Clacu01g0633 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.7e-173 603.6
Clacu05g1305 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 2.9e-161 565.5
Clacu03g0853 . 49 597 GRAS Transcription Factor Family AT3G03450 61.7 8.2e-178 620.5
Clacu01g0633 . 10 578 GRAS Transcription Factor Family AT3G03450 58.0 4.4e-171 598.2
Clacu05g1305 . 31 555 GRAS Transcription Factor Family AT3G03450 58.3 7.7e-160 560.8
Clacu03g0853 . 48 599 GRAS Transcription Factor Family AT5G17490 56.0 6.9e-158 554.3
Clacu01g0633 . 42 578 GRAS Transcription Factor Family AT5G17490 57.1 4.2e-155 545.0
Clacu05g1305 . 28 555 GRAS Transcription Factor Family AT5G17490 52.9 1.6e-138 490.0
Clacu09g0971 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 2.7e-174 609.0
Clacu10g0438 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 4.8e-115 412.1
Clacu02g0968 . 168 523 GRAS Transcription Factor Family AT1G21450 52.9 1.7e-107 387.1
Clacu03g0137 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 1.8e-128 456.8
Clacu10g2088 . 369 753 GRAS Transcription Factor Family AT5G59450 54.9 9.3e-122 434.5
Clacu01g2210 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.3e-176 615.1
Clacu02g0968 . 1 519 GRAS Transcription Factor Family AT4G17230 50.2 2.2e-135 479.6
Clacu10g0438 . 60 544 GRAS Transcription Factor Family AT4G17230 51.8 8.3e-135 477.6
Clacu02g0968 . 134 518 GRAS Transcription Factor Family AT2G04890 65.6 1.1e-145 513.5
Clacu10g0438 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 4.2e-142 501.5
Clacu01g2210 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.7e-125 445.7
Clacu05g1649 . 2 112 GRAS Transcription Factor Family AT2G04890 64.0 1.3e-37 154.5
Clacu03g1334 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 9.4e-178 620.2
Clacu05g2275 . 49 485 GRAS Transcription Factor Family AT1G50420 60.1 2.6e-143 505.8
Clacu06g0300 . 377 742 GRAS Transcription Factor Family AT4G00150 59.7 1.2e-120 430.6
Clacu10g0268 . 417 780 GRAS Transcription Factor Family AT4G00150 55.4 2.8e-104 376.3
Clacu01g2009 . 1 600 GRAS Transcription Factor Family AT3G50650 50.4 1.4e-145 513.5
Clacu07g0918 . 9 553 GRAS Transcription Factor Family AT3G50650 52.7 3.4e-144 508.8
Clacu04g0554 . 237 837 GRAS Transcription Factor Family AT3G54220 64.1 4.7e-204 708.0
Clacu07g1089 . 73 441 GRAS Transcription Factor Family AT3G54220 64.2 2.7e-135 479.6
Clacu01g1825 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 9.2e-158 553.9
Clacu02g1298 . 106 496 GRAS Transcription Factor Family AT4G37650 56.6 3.0e-124 442.6
Clacu06g0103 . 60 455 GRAS Transcription Factor Family AT4G37650 50.5 1.7e-111 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010645 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48454 PF03514 GRAS 1.40E-129 CL0063 Clacu TF