Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0440 ATGATGCCTAGTATGATGACAGAGTCATCAGAGAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATATGGGCGGTACGGGGAGCTTCTGGGGACAGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGAAACCTTAGAGAGTACAGGAAGAAGCATAGGCAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTTAAGGGTTTGCATTATTTGCATTCTCATGACCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTAAAGATTGGTGACTTGGGTTTAGCAGCAACCGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTAGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTATAAAAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGACAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATCGAGAATTGCCTTGCCGAATCTCGAGCTCGGCCCTCAGCTGCTGACCTCCTCCGCCACCCCTTCTTTGGAGAAATTGATGATGACGAAAACGACGACGACAATGATTATTAA 900 42.89 MMPSMMTESSEKETEAFVEVDPTGRYGRYGELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHSHDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALDKVKDPEVKAFIENCLAESRARPSAADLLRHPFFGEIDDDENDDDNDY 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5489405 5491682 + ClG42_10g0044000.10 Clacu10g0440 259064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0440 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu10g0440 299 PIRSF TyrPK_CSF1-R 26 132 - -
Clacu10g0440 299 PIRSF TyrPK_CSF1-R 119 282 - -
Clacu10g0440 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Clacu10g0440 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0440 299 CDD STKc_WNK 25 285 - -
Clacu10g0440 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Clacu10g0440 299 SUPERFAMILY Protein kinase-like (PK-like) 29 290 IPR011009 -
Clacu10g0440 299 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Clacu10g0440 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Clacu10g0440 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0982 Clacu-Chr6:13991182 Clacu10g0440 Clacu-Chr10:5489405 3.10E-101 dispersed
Clacu09g1090 Clacu-Chr9:10350225 Clacu10g0440 Clacu-Chr10:5489405 1.80E-11 dispersed
Clacu10g0440 Clacu-Chr10:5489405 Clacu05g1942 Clacu-Chr5:28609555 1.10E-22 dispersed
Clacu10g0440 Clacu-Chr10:5489405 Clacu03g0309 Clacu-Chr3:3611049 2.50E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73865 PF00069 Pkinase 8.50E-52 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0440 K08867 - csv:101221172 555.058