Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0446 ATGGCTCTACAGAGTTTTGGTTCGTTAATCAAAGAGCCTCGTTTTGTAGTTAGAAAGTTTCTTGCTAGACCTCAACATGAAGGCCTTGGCGCTGTTGTAAGAAGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCATTCCTTGTTCTCGATGAGTTTTCTGTTACTGCACCTGCTGGGTTTCCTGATCATCCACATAGAGGATTTGAAACTGTCACTTACATGTTAGAGGGAGCAATGACACATGAAGATTTCAAAGGGCATAAAGGAAGAATTGGAGCTGGTGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTTCACTCTGAAATGCCTGCATCCCATGGCACCCAACATGGCTTACAACTTTGGATCAATCTTTCCTCCAAACACAAAATGATTGAGCCAAGGTATCAAGAAATACACAACGAGGACGTAGTAGAAGTTACAAGAGAAGGAGTAAAAGTGAGAGTGATAGCAGGGGAAGCCTTAGGAGCAAAATCCCCAATCTACACCAAAACTCCAACCATGTACTTGGACTTCACTCTCGGCCCGGGATCTCGCATCGAGCAGCCGATCCCGGTGGGGTGGAATGCGTTCGTGTACGTACTAGAAGGTGAGGGCGGAGTGTTTGGGAGCATGAAATCGATGCCGATTACGCCACATCACCTTCTTTTGTTGGGGAATGGGGATGGGTTGGAGGCTTGGAACAAGTCCTCCTCCAAAGCCCTAAGGTTCATATTGGTTGGGGGTCAGCCATTGAATGAGAGCGTTGTGCAGTTGGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACCATAGAGGATTTTGAGAATTGTACAAATGGATTTGAGAGAGCAAGGCATTGGAGTTCACAACCTTAA 894 45.86 MALQSFGSLIKEPRFVVRKFLARPQHEGLGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLEGAMTHEDFKGHKGRIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEIHNEDVVEVTREGVKVRVIAGEALGAKSPIYTKTPTMYLDFTLGPGSRIEQPIPVGWNAFVYVLEGEGGVFGSMKSMPITPHHLLLLGNGDGLEAWNKSSSKALRFILVGGQPLNESVVQLGPFVMNTQEEIDQTIEDFENCTNGFERARHWSSQP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5551941 5554505 - ClG42_10g0044600.10 Clacu10g0446 259070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0446 297 Pfam Pirin 33 126 IPR003829 -
Clacu10g0446 297 FunFam pirin 27 164 - -
Clacu10g0446 297 Gene3D Jelly Rolls 27 281 IPR014710 -
Clacu10g0446 297 Pfam Pirin C-terminal cupin domain 179 286 IPR008778 -
Clacu10g0446 297 CDD cupin_pirin_C 176 254 - -
Clacu10g0446 297 PIRSF Pirin 12 294 IPR012093 -
Clacu10g0446 297 Gene3D Jelly Rolls 148 255 IPR014710 -
Clacu10g0446 297 PANTHER PIRIN-RELATED 11 296 IPR012093 -
Clacu10g0446 297 SUPERFAMILY RmlC-like cupins 14 295 IPR011051 -
Clacu10g0446 297 CDD cupin_pirin_N 31 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g2121 Clacu-Chr9:35996354 Clacu10g0446 Clacu-Chr10:5551941 2.00E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0446 K06911 - csv:101204082 536.184