Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0465 ATGGCTGTTGAGACTTTTGGAAAAGCTCCAATGTTTGATGACGACGATGATGAGGACAACATGCCGATAGTTTTTAAAAGGAGTAGTGCATCTAGGCAAAATCAGTTAGATTCGGAAATTAAGCATTCACAATCTCAGAGGTTGAATAAGTTATCAGGGAGACCGGGTTCTGATGTATGTTCATCCAATGGCCAAAGCTCTAATAATCAAAAAAGGATGACTCCATTGCCAAAGACATCGCCCATGAGATCCGAAATAGGCAGTCCGAAAGCATCCAAGTCCTCAATCCAGGAACCACTTGTTAAACCACTAGGCACAACTTTAAAAGTTTCAGATTCTATGGGTAGCCGGCCGAAACATTTGGTAAACGCTGCTGTGAAAGAGGAGAATTTTACTATAAATCCTACTGACGACAATAGTGATTCAGAAGATGATAAACCATTGAGTATTAGATTGAAAGGGAACTCCAATCAGCCCAATAAAGGGCCTGTACCAACAGCACCAAAGAATAAAGTAAAAAAACCATCAGGAGATTCTGATGATGAAATTCCTTTGTCATCAAAATTTCAAATGAAGTCTGCTTCAGGGGCTTTGGGTGGTAAACAACATGGTTTTGACGAGAAGAAACCATTGGTTCCAAAAGTTCATCAGAATGGTTCGACCTCAAGGGATAAACTGCAAAAGCCTGCTATTCTTTCCAGCAAGAGACCTCTTCCTAGTGCAGATTCCCATTCCTCTTCTCAAATTTCAATGAAAAAGCCAAAGCTTTCAGACTCATCTACTCCTTTGAGTAGCAAGCCAGTATCATTGAAGGCAAAACAAGAAATAGACGATGACGACGATATTCCTATTTCACAGAGAATGAAAAAGATATCTGCACCAGTGAATAAGTCATCAAGTTCTAAGCAAACAGTATCAAAAGTTGTTTCTTCTTCAATCAAGAAAACATTCAAGAAGTCCAAAAAGCCAGTCAAGAAATCTAAATATGTTAAGTCCACAAAGTTGCTTCCCAGTGCCGGTGATGGACAGAAAAAATGGACCACCTTGGTTCACAATGGTGTCATTTTCCCACCTCCATACCAGACTCATGGGGTGAAGATACTTTATAAAGGGAAGCCTGTTGATTTGACTCCGGAACAAGAGGAGGTTGCAACCATGTTTGCTGTGATGAAGGATACAGATTATATGCTAAAACCAAAGTTCAAAGAAAATTTCTGGAATGACTGGCGCAAATTACTTGGGAAAAACCATGTCATTCAAAATTTGGATGATTGTGATTTTACCCCAATATATGACTGGTATCAGACCGAAAAGGAGAAGAAGAAACAGATGACTACAGAAGAGAAGAAAGCTTTGAAGGAAGAGAAACTGAAACAAGAGGAGAAGTACATGTGGGCTATTCTTGATGGGGTTAAGGAGAAGGTTGGAAACTTCAGAGTTGAACCGCCTGGATTGTTCCGAGGCCGTGGAGAACATCCAAAGATGGGGAAATTGAAAAGGCGCATTCGACCCAGCGACATCACAATTAATATTGGAAAAGGTGCTCCGATCCCTGAGTGTCCTATACCTGGTGAAAGTTGGAAGGAAGTGAGACATGACAATACAGTCACATGGTTGGCTTTCTGGAATGATCCAATAAATCAAAAAGAATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCTCTGAAAGGTCAGAGTGACAAAGAGAAATACGAGAAAGCAAGGATGCTCAAGGACTACATAAAAAACATAAGGAATGCGTATACAAAGGATTTTACGAGCAAAGACTCCACACGAAGGCAAATTGCAGTTGCTACTTATCTCATTGATAAACTGGCTCTTAGGGCTGGAAATGAGAAAGATGACGATGAAGCTGATACAGTTGGCTGCTGTACACTGAAAGTAGAGAACGTTAAAGCAGTACCTCCGAATCTTCTGGAGTTCAACTTCCTCGGTAAAGATTCAATCAAGTATGAAAATACTGTTGAGGTTGAGCTCCCTGTTTTCAAAGCAATCACACAATTTCAAAGTGGAAAAAGTGGAACCGATGATCTTTTTGACAAGCTGGATACGAATAAATTGAATGCTCATCTGAAGGATCTCATGCCTGGTCTCACTGCAAAAGTGTTTCGTACATATAATGCTTCTATCACACTTGATGACATGTTGAATAGAGGAACCAAAGATGGAGACGTTGCAGAAAAGATCGTCACATACCAGCACGCAAACAAGGAGGTTGCAATTATTTGTAATCACCAGCGGACTGTTTCAAAATCGCATGGGGCGCAAATGACAAGATTGAATGAGAAGATCTCTGAGCTCAGGGACATTCTGAAAGAGCTGAAAATTGATTTAGATAGAGCAAAGAAAGGGAAGCCCCCTTTAAAAGATGCTGATGGAAAGCGAAAGAGGAATTTGACCCCTGAAGCGTTAGAGAAGAAAATATCCCAAACGAATGCAAAGATTGAGAAGATAGAGCGAGATATGAAGACTAAAGAGGATTTGAAAACTGTAGCCTTGGGCACGTCAAAGATCAACTACCTTGATCCTCGAATCACAGTCGCGTGGTGTAAGCGTCATGAAGTCCCTATTGAAAAGATATTCAACAAGTCTCTTCTAGCAAAGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTGGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACAGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCGCTGTCATATGGCTGCTCATTCAATACTTGTAA 3414 41.1 MAVETFGKAPMFDDDDDEDNMPIVFKRSSASRQNQLDSEIKHSQSQRLNKLSGRPGSDVCSSNGQSSNNQKRMTPLPKTSPMRSEIGSPKASKSSIQEPLVKPLGTTLKVSDSMGSRPKHLVNAAVKEENFTINPTDDNSDSEDDKPLSIRLKGNSNQPNKGPVPTAPKNKVKKPSGDSDDEIPLSSKFQMKSASGALGGKQHGFDEKKPLVPKVHQNGSTSRDKLQKPAILSSKRPLPSADSHSSSQISMKKPKLSDSSTPLSSKPVSLKAKQEIDDDDDIPISQRMKKISAPVNKSSSSKQTVSKVVSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKWTTLVHNGVIFPPPYQTHGVKILYKGKPVDLTPEQEEVATMFAVMKDTDYMLKPKFKENFWNDWRKLLGKNHVIQNLDDCDFTPIYDWYQTEKEKKKQMTTEEKKALKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGAPIPECPIPGESWKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTSKDSTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLLEFNFLGKDSIKYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTNKLNAHLKDLMPGLTAKVFRTYNASITLDDMLNRGTKDGDVAEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLNEKISELRDILKELKIDLDRAKKGKPPLKDADGKRKRNLTPEALEKKISQTNAKIEKIERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKEFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVVLIAVIWLLIQYL 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5680693 5691846 + ClG42_10g0046500.10 Clacu10g0465 259089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0465 1137 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 834 852 IPR018521 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 340 557 IPR036202 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 SUPERFAMILY SNARE fusion complex 1032 1103 - -
Clacu10g0465 1137 Coils Coil 434 462 - -
Clacu10g0465 1137 CDD SNARE_Qc 1044 1101 - -
Clacu10g0465 1137 Pfam C-terminal topoisomerase domain 820 875 IPR025834 -
Clacu10g0465 1137 Gene3D Topoisomerase I; Chain A, domain 3 559 707 IPR014711 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 FunFam DNA topoisomerase I 433 556 - -
Clacu10g0465 1137 MobiDBLite consensus disorder prediction 26 77 - -
Clacu10g0465 1137 SMART topeu 485 861 IPR013499 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 Gene3D - 1043 1105 - -
Clacu10g0465 1137 MobiDBLite consensus disorder prediction 85 101 - -
Clacu10g0465 1137 FunFam DNA topoisomerase I 708 879 - -
Clacu10g0465 1137 PANTHER DNA TOPOISOMERASE I 65 875 IPR051062 GO:0003917(PANTHER)|GO:0005730(PANTHER)|GO:0006260(PANTHER)|GO:0006265(PANTHER)|GO:0007059(PANTHER)
Clacu10g0465 1137 Gene3D - 361 444 IPR013034 GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 CDD Topo_IB_C 565 758 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 FunFam DNA topoisomerase I 360 444 - -
Clacu10g0465 1137 SMART tSNARE_6 1036 1103 IPR000727 -
Clacu10g0465 1137 FunFam syntaxin-51 isoform X2 1043 1105 - -
Clacu10g0465 1137 Coils Coil 764 791 - -
Clacu10g0465 1137 Pfam SNARE domain 1078 1128 IPR000727 -
Clacu10g0465 1137 MobiDBLite consensus disorder prediction 238 268 - -
Clacu10g0465 1137 Pfam Eukaryotic DNA topoisomerase I, catalytic core 559 782 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 646 662 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 624 638 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 485 494 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 601 620 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 841 852 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 PRINTS Eukaryotic DNA topoisomerase I signature 704 718 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 Coils Coil 815 835 - -
Clacu10g0465 1137 Gene3D - 708 878 IPR014727 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 Gene3D DNA Topoisomerase I, domain 2 341 556 IPR013030 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Clacu10g0465 1137 MobiDBLite consensus disorder prediction 789 810 - -
Clacu10g0465 1137 FunFam DNA topoisomerase I 559 707 - -
Clacu10g0465 1137 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1041 1103 IPR000727 -
Clacu10g0465 1137 MobiDBLite consensus disorder prediction 1 283 - -
Clacu10g0465 1137 SUPERFAMILY DNA breaking-rejoining enzymes 559 872 IPR011010 GO:0003677(InterPro)
Clacu10g0465 1137 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 344 556 IPR008336 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0465 K03163 - - csv:101222429 1515.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0052 Clacu-Chr6:691193 Clacu10g0465 Clacu-Chr10:5680693 6.40E-06 dispersed
Clacu09g1107 Clacu-Chr9:10578038 Clacu10g0465 Clacu-Chr10:5680693 3.50E-96 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1440 . 8 382 SNARE and Associated Proteins AT3G24350 53.1 2.0e-84 309.7
Clacu04g0566 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 3.5e-101 365.2
Clacu01g2023 . 516 817 SNARE and Associated Proteins AT2G18260 54.4 9.2e-86 313.9
Clacu10g1804 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.3e-115 411.8
Clacu01g1572 . 26 282 SNARE and Associated Proteins AT3G11820 72.8 8.5e-103 370.5
Clacu03g0558 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.0e-92 337.0
Clacu10g1344 . 30 284 SNARE and Associated Proteins AT3G11820 52.5 4.7e-69 258.5
Clacu10g1804 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.6e-92 334.7
Clacu01g1572 . 33 282 SNARE and Associated Proteins AT3G52400 64.8 2.3e-85 312.8
Clacu03g0558 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.4e-81 298.9
Clacu03g0558 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 2.9e-108 388.7
Clacu10g1804 . 1 279 SNARE and Associated Proteins AT4G03330 58.2 1.5e-83 306.6
Clacu01g1572 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 3.7e-79 292.0
Clacu10g1344 . 1 284 SNARE and Associated Proteins AT4G03330 52.1 7.8e-69 257.7
Clacu03g0558 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 9.6e-128 453.4
Clacu10g1804 . 1 279 SNARE and Associated Proteins AT1G61290 63.1 4.2e-91 331.6
Clacu01g1572 . 1 297 SNARE and Associated Proteins AT1G61290 56.6 1.6e-85 313.2
Clacu03g0558 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.7e-124 442.6
Clacu10g1804 . 1 279 SNARE and Associated Proteins AT1G11250 62.7 3.4e-93 338.6
Clacu01g1572 . 1 292 SNARE and Associated Proteins AT1G11250 57.2 1.1e-86 317.0
Clacu10g1344 . 1 303 SNARE and Associated Proteins AT3G03800 73.9 4.7e-114 407.9
Clacu02g0875 . 41 327 SNARE and Associated Proteins AT3G03800 55.6 2.0e-80 296.2
Clacu10g1344 . 1 202 SNARE and Associated Proteins AT5G08080 78.8 1.4e-80 296.2
Clacu02g0875 . 27 227 SNARE and Associated Proteins AT5G08080 58.7 1.3e-52 203.4
Clacu10g0141 . 1 253 SNARE and Associated Proteins AT5G16830 59.5 1.9e-74 276.2
Clacu10g0141 . 1 253 SNARE and Associated Proteins AT5G46860 66.0 9.6e-79 290.4
Clacu10g0141 . 1 242 SNARE and Associated Proteins AT4G17730 63.2 4.5e-73 271.6
Clacu10g0141 . 65 253 SNARE and Associated Proteins AT1G32270 59.8 1.1e-50 197.6
Clacu07g0410 . 1 336 SNARE and Associated Proteins AT5G05760 65.9 3.1e-111 398.7
Clacu08g1440 . 8 382 SNARE and Associated Proteins AT3G24350 53.1 2.0e-84 309.7
Clacu02g1560 . 32 358 SNARE and Associated Proteins AT5G26980 76.8 4.6e-128 454.5
Clacu09g0546 . 1 318 SNARE and Associated Proteins AT5G26980 66.2 2.5e-102 369.0
Clacu09g0546 . 1 318 SNARE and Associated Proteins AT4G02195 66.8 1.1e-105 380.2
Clacu02g1560 . 32 360 SNARE and Associated Proteins AT4G02195 64.4 3.2e-105 378.6
Clacu02g1560 . 32 359 SNARE and Associated Proteins AT3G05710 76.3 3.9e-130 461.5
Clacu09g0546 . 1 318 SNARE and Associated Proteins AT3G05710 63.7 1.0e-98 357.1
Clacu09g1107 . 84 316 SNARE and Associated Proteins AT1G16240 72.1 2.3e-89 325.5
Clacu10g0465 . 905 1137 SNARE and Associated Proteins AT1G16240 67.8 3.2e-83 305.1
Clacu09g1107 . 83 316 SNARE and Associated Proteins AT1G79590 71.4 3.8e-88 321.6
Clacu10g0465 . 900 1137 SNARE and Associated Proteins AT1G79590 67.2 1.5e-84 309.7
Clacu06g0052 . 168 358 SNARE and Associated Proteins AT1G28490 71.7 8.2e-67 250.4
Clacu10g2011 . 1 264 SNARE and Associated Proteins AT3G09740 79.7 2.6e-113 405.2
Clacu02g2162 . 1 265 SNARE and Associated Proteins AT3G09740 67.4 9.4e-95 343.6
Clacu02g2162 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 7.5e-92 334.0
Clacu10g2011 . 1 264 SNARE and Associated Proteins AT3G45280 64.4 8.6e-88 320.5
Clacu10g2011 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 7.1e-95 344.0
Clacu02g2162 . 1 262 SNARE and Associated Proteins AT3G61450 61.0 1.9e-84 309.3
Clacu11g0790 . 65 290 SNARE and Associated Proteins AT1G51740 69.3 1.1e-78 290.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004748 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 0 3 4 1 41