Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g0465 | ATGGCTGTTGAGACTTTTGGAAAAGCTCCAATGTTTGATGACGACGATGATGAGGACAACATGCCGATAGTTTTTAAAAGGAGTAGTGCATCTAGGCAAAATCAGTTAGATTCGGAAATTAAGCATTCACAATCTCAGAGGTTGAATAAGTTATCAGGGAGACCGGGTTCTGATGTATGTTCATCCAATGGCCAAAGCTCTAATAATCAAAAAAGGATGACTCCATTGCCAAAGACATCGCCCATGAGATCCGAAATAGGCAGTCCGAAAGCATCCAAGTCCTCAATCCAGGAACCACTTGTTAAACCACTAGGCACAACTTTAAAAGTTTCAGATTCTATGGGTAGCCGGCCGAAACATTTGGTAAACGCTGCTGTGAAAGAGGAGAATTTTACTATAAATCCTACTGACGACAATAGTGATTCAGAAGATGATAAACCATTGAGTATTAGATTGAAAGGGAACTCCAATCAGCCCAATAAAGGGCCTGTACCAACAGCACCAAAGAATAAAGTAAAAAAACCATCAGGAGATTCTGATGATGAAATTCCTTTGTCATCAAAATTTCAAATGAAGTCTGCTTCAGGGGCTTTGGGTGGTAAACAACATGGTTTTGACGAGAAGAAACCATTGGTTCCAAAAGTTCATCAGAATGGTTCGACCTCAAGGGATAAACTGCAAAAGCCTGCTATTCTTTCCAGCAAGAGACCTCTTCCTAGTGCAGATTCCCATTCCTCTTCTCAAATTTCAATGAAAAAGCCAAAGCTTTCAGACTCATCTACTCCTTTGAGTAGCAAGCCAGTATCATTGAAGGCAAAACAAGAAATAGACGATGACGACGATATTCCTATTTCACAGAGAATGAAAAAGATATCTGCACCAGTGAATAAGTCATCAAGTTCTAAGCAAACAGTATCAAAAGTTGTTTCTTCTTCAATCAAGAAAACATTCAAGAAGTCCAAAAAGCCAGTCAAGAAATCTAAATATGTTAAGTCCACAAAGTTGCTTCCCAGTGCCGGTGATGGACAGAAAAAATGGACCACCTTGGTTCACAATGGTGTCATTTTCCCACCTCCATACCAGACTCATGGGGTGAAGATACTTTATAAAGGGAAGCCTGTTGATTTGACTCCGGAACAAGAGGAGGTTGCAACCATGTTTGCTGTGATGAAGGATACAGATTATATGCTAAAACCAAAGTTCAAAGAAAATTTCTGGAATGACTGGCGCAAATTACTTGGGAAAAACCATGTCATTCAAAATTTGGATGATTGTGATTTTACCCCAATATATGACTGGTATCAGACCGAAAAGGAGAAGAAGAAACAGATGACTACAGAAGAGAAGAAAGCTTTGAAGGAAGAGAAACTGAAACAAGAGGAGAAGTACATGTGGGCTATTCTTGATGGGGTTAAGGAGAAGGTTGGAAACTTCAGAGTTGAACCGCCTGGATTGTTCCGAGGCCGTGGAGAACATCCAAAGATGGGGAAATTGAAAAGGCGCATTCGACCCAGCGACATCACAATTAATATTGGAAAAGGTGCTCCGATCCCTGAGTGTCCTATACCTGGTGAAAGTTGGAAGGAAGTGAGACATGACAATACAGTCACATGGTTGGCTTTCTGGAATGATCCAATAAATCAAAAAGAATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCTCTGAAAGGTCAGAGTGACAAAGAGAAATACGAGAAAGCAAGGATGCTCAAGGACTACATAAAAAACATAAGGAATGCGTATACAAAGGATTTTACGAGCAAAGACTCCACACGAAGGCAAATTGCAGTTGCTACTTATCTCATTGATAAACTGGCTCTTAGGGCTGGAAATGAGAAAGATGACGATGAAGCTGATACAGTTGGCTGCTGTACACTGAAAGTAGAGAACGTTAAAGCAGTACCTCCGAATCTTCTGGAGTTCAACTTCCTCGGTAAAGATTCAATCAAGTATGAAAATACTGTTGAGGTTGAGCTCCCTGTTTTCAAAGCAATCACACAATTTCAAAGTGGAAAAAGTGGAACCGATGATCTTTTTGACAAGCTGGATACGAATAAATTGAATGCTCATCTGAAGGATCTCATGCCTGGTCTCACTGCAAAAGTGTTTCGTACATATAATGCTTCTATCACACTTGATGACATGTTGAATAGAGGAACCAAAGATGGAGACGTTGCAGAAAAGATCGTCACATACCAGCACGCAAACAAGGAGGTTGCAATTATTTGTAATCACCAGCGGACTGTTTCAAAATCGCATGGGGCGCAAATGACAAGATTGAATGAGAAGATCTCTGAGCTCAGGGACATTCTGAAAGAGCTGAAAATTGATTTAGATAGAGCAAAGAAAGGGAAGCCCCCTTTAAAAGATGCTGATGGAAAGCGAAAGAGGAATTTGACCCCTGAAGCGTTAGAGAAGAAAATATCCCAAACGAATGCAAAGATTGAGAAGATAGAGCGAGATATGAAGACTAAAGAGGATTTGAAAACTGTAGCCTTGGGCACGTCAAAGATCAACTACCTTGATCCTCGAATCACAGTCGCGTGGTGTAAGCGTCATGAAGTCCCTATTGAAAAGATATTCAACAAGTCTCTTCTAGCAAAGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTGGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACAGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCGCTGTCATATGGCTGCTCATTCAATACTTGTAA | 3414 | 41.1 | MAVETFGKAPMFDDDDDEDNMPIVFKRSSASRQNQLDSEIKHSQSQRLNKLSGRPGSDVCSSNGQSSNNQKRMTPLPKTSPMRSEIGSPKASKSSIQEPLVKPLGTTLKVSDSMGSRPKHLVNAAVKEENFTINPTDDNSDSEDDKPLSIRLKGNSNQPNKGPVPTAPKNKVKKPSGDSDDEIPLSSKFQMKSASGALGGKQHGFDEKKPLVPKVHQNGSTSRDKLQKPAILSSKRPLPSADSHSSSQISMKKPKLSDSSTPLSSKPVSLKAKQEIDDDDDIPISQRMKKISAPVNKSSSSKQTVSKVVSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKWTTLVHNGVIFPPPYQTHGVKILYKGKPVDLTPEQEEVATMFAVMKDTDYMLKPKFKENFWNDWRKLLGKNHVIQNLDDCDFTPIYDWYQTEKEKKKQMTTEEKKALKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGAPIPECPIPGESWKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTSKDSTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLLEFNFLGKDSIKYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTNKLNAHLKDLMPGLTAKVFRTYNASITLDDMLNRGTKDGDVAEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLNEKISELRDILKELKIDLDRAKKGKPPLKDADGKRKRNLTPEALEKKISQTNAKIEKIERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKEFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVVLIAVIWLLIQYL | 1137 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5680693 | 5691846 | + | ClG42_10g0046500.10 | Clacu10g0465 | 259089 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g0465 | 1137 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 834 | 852 | IPR018521 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 340 | 557 | IPR036202 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | SUPERFAMILY | SNARE fusion complex | 1032 | 1103 | - | - | |
| Clacu10g0465 | 1137 | Coils | Coil | 434 | 462 | - | - | |
| Clacu10g0465 | 1137 | CDD | SNARE_Qc | 1044 | 1101 | - | - | |
| Clacu10g0465 | 1137 | Pfam | C-terminal topoisomerase domain | 820 | 875 | IPR025834 | - | |
| Clacu10g0465 | 1137 | Gene3D | Topoisomerase I; Chain A, domain 3 | 559 | 707 | IPR014711 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | FunFam | DNA topoisomerase I | 433 | 556 | - | - | |
| Clacu10g0465 | 1137 | MobiDBLite | consensus disorder prediction | 26 | 77 | - | - | |
| Clacu10g0465 | 1137 | SMART | topeu | 485 | 861 | IPR013499 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | Gene3D | - | 1043 | 1105 | - | - | |
| Clacu10g0465 | 1137 | MobiDBLite | consensus disorder prediction | 85 | 101 | - | - | |
| Clacu10g0465 | 1137 | FunFam | DNA topoisomerase I | 708 | 879 | - | - | |
| Clacu10g0465 | 1137 | PANTHER | DNA TOPOISOMERASE I | 65 | 875 | IPR051062 | GO:0003917(PANTHER)|GO:0005730(PANTHER)|GO:0006260(PANTHER)|GO:0006265(PANTHER)|GO:0007059(PANTHER) | |
| Clacu10g0465 | 1137 | Gene3D | - | 361 | 444 | IPR013034 | GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | CDD | Topo_IB_C | 565 | 758 | IPR013500 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | FunFam | DNA topoisomerase I | 360 | 444 | - | - | |
| Clacu10g0465 | 1137 | SMART | tSNARE_6 | 1036 | 1103 | IPR000727 | - | |
| Clacu10g0465 | 1137 | FunFam | syntaxin-51 isoform X2 | 1043 | 1105 | - | - | |
| Clacu10g0465 | 1137 | Coils | Coil | 764 | 791 | - | - | |
| Clacu10g0465 | 1137 | Pfam | SNARE domain | 1078 | 1128 | IPR000727 | - | |
| Clacu10g0465 | 1137 | MobiDBLite | consensus disorder prediction | 238 | 268 | - | - | |
| Clacu10g0465 | 1137 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 559 | 782 | IPR013500 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 646 | 662 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 624 | 638 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 485 | 494 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 601 | 620 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 841 | 852 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | PRINTS | Eukaryotic DNA topoisomerase I signature | 704 | 718 | IPR001631 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | Coils | Coil | 815 | 835 | - | - | |
| Clacu10g0465 | 1137 | Gene3D | - | 708 | 878 | IPR014727 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | Gene3D | DNA Topoisomerase I, domain 2 | 341 | 556 | IPR013030 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro) | |
| Clacu10g0465 | 1137 | MobiDBLite | consensus disorder prediction | 789 | 810 | - | - | |
| Clacu10g0465 | 1137 | FunFam | DNA topoisomerase I | 559 | 707 | - | - | |
| Clacu10g0465 | 1137 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 1041 | 1103 | IPR000727 | - | |
| Clacu10g0465 | 1137 | MobiDBLite | consensus disorder prediction | 1 | 283 | - | - | |
| Clacu10g0465 | 1137 | SUPERFAMILY | DNA breaking-rejoining enzymes | 559 | 872 | IPR011010 | GO:0003677(InterPro) | |
| Clacu10g0465 | 1137 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 344 | 556 | IPR008336 | GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g0052 | Clacu-Chr6:691193 | Clacu10g0465 | Clacu-Chr10:5680693 | 6.40E-06 | dispersed | |
| Clacu09g1107 | Clacu-Chr9:10578038 | Clacu10g0465 | Clacu-Chr10:5680693 | 3.50E-96 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g0465 | K03163 | - | csv:101222429 | 1515.36 |