Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0478 ATGGCGAGCGAGACCGAGCCGGCGAAGCTCCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCATGAACCTCTTGTCGCATATTACTGTCGATTATATGCTATGGAACGCGGGCTGAAGATTCCACCGGGCGAACGTACCAAGACCACAAATGCCCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGATAAGAAGTCACTCAACCTTGGGCCTGATGATAGTTTGCATCTAGAGGGTTTTGCATTGAATGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTTGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACCTGGAGCAAAAACGGAAATACGCAGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAAGGAAGGAAACCACAGCCTGGTCCACCCTCTGGTGATGATGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGATGTAAGACCAGGAGAGCCTCAAGTTTCGAGAACTCAATCACAATCAGATTCGTTGTCTCAGGTTTATGATAAGGCTAATGACGATCACGCAAATATCCCACAAAGTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACACATCGCCACCTGCCCAATTCCATAATGAAGTCGACAATCAGCACCCTCCAAATATTCCATCATACCCTGCAGCTGGTTATCCATCCCATGAGTTTCATCTGCCTCCTCCGAGGAATGAACCAGACAGTTCCTCTTACACTCAGCCATACCACCACATCCAATCCTACTCACAAGAGCATCAACAACAGCCTCTGCCTCATAATTATCCATCTAATGAAACCTCCCCTAATTACTCTTATCCCCATTTCCAATCTTATCCAAGTTTCTCGGAAAGCAGCCTCCCGACCGCTCCTTCTCACTATCCGACCTATTACCAAGGATCCGATGCTTCATACTCTTCTCAAGGGACTCCTCCTCCTGCCAGCTACCCATCAGCTTCCCAGTATCATTCAAATGGCAGAGAGGGGACGACCTCAGAACCTCAACCTACCCCAGCTCCAGCCAAGTCATACCACTACGACAGCAACTACCAGCCAGCTCCTGAGAAAATCGCTGAGGCACACAAGGCCGCTAGGTTTGCAGTAGGCGCTTTGGCATTTGATGATGTTTCAGTTGCAGTAGAGCACTTGAAGAAATCACTGGAATTGTTGACTAACCCTTCAGCCAATGTGGATGCAGCTTGTAGTACTCGCTTGGGTAGTGTGGGGTTTGGAGCAGTGTTGTGGGGCTCTCAGAGGCGGGTAGTGGTGACTGCTTCAATGTTCATGCCGACTCAAGTTGATGTCTTGGCGGCGGAAGCTATAGCTCTTCTTCATGGTCTGAAGTTGGTTGATCGTTTTCGTTGCTGGAACTTCTCTATTGAATCGGATTCGCAGGTGTTAGTCAATGCGATTCATTCATATCGTTTGGTGTTATTTGGGAGGCAAGTTACGTTAAGATTTTCATTCTCTCTAGATCTTTTAATTGTGTTCACAATTAGTGAGTTGGGTAGTGTCTAG 1611 46.93 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPPGERTKTTNALLVSLMNQLEKDKKSLNLGPDDSLHLEGFALNVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDDDLSVPSSTPTSANDVRPGEPQVSRTQSQSDSLSQVYDKANDDHANIPQSPQVYDNMNNHTSLNTSPPAQFHNEVDNQHPPNIPSYPAAGYPSHEFHLPPPRNEPDSSSYTQPYHHIQSYSQEHQQQPLPHNYPSNETSPNYSYPHFQSYPSFSESSLPTAPSHYPTYYQGSDASYSSQGTPPPASYPSASQYHSNGREGTTSEPQPTPAPAKSYHYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVEHLKKSLELLTNPSANVDAACSTRLGSVGFGAVLWGSQRRVVVTASMFMPTQVDVLAAEAIALLHGLKLVDRFRCWNFSIESDSQVLVNAIHSYRLVLFGRQVTLRFSFSLDLLIVFTISELGSV 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5852044 5861405 - ClG42_10g0047800.10 Clacu10g0478 259102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0478 536 Gene3D - 425 515 IPR036397 GO:0003676(InterPro)
Clacu10g0478 536 MobiDBLite consensus disorder prediction 146 380 - -
Clacu10g0478 536 Gene3D - 3 152 IPR023175 -
Clacu10g0478 536 Pfam Reverse transcriptase-like 427 503 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Clacu10g0478 536 MobiDBLite consensus disorder prediction 162 196 - -
Clacu10g0478 536 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 269 IPR044538 GO:0005771(PANTHER)|GO:0032511(PANTHER)|GO:0032511(InterPro)
Clacu10g0478 536 Pfam Vta1 like 12 148 IPR039431 -
Clacu10g0478 536 MobiDBLite consensus disorder prediction 264 375 - -
Clacu10g0478 536 Gene3D Immunoglobulin FC, subunit C 384 423 - -
Clacu10g0478 536 MobiDBLite consensus disorder prediction 205 240 - -
Clacu10g0478 536 Pfam Vta1 C-terminal domain 385 422 IPR041212 -
Clacu10g0478 536 SUPERFAMILY Ribonuclease H-like 426 505 IPR012337 -
Clacu10g0478 536 CDD RNase_H_like 427 505 IPR044730 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0478 K12199 - - csv:101217617 823.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g577 . . . . Bpe09g00150 . Bma10g00579 Bma13g01092 Cmo16g00949 Cmo06g00890 . . . . . . . . . . . . . . Cla10g00471 Cam10g0459 Cec10g0480 Cco10g0468 Clacu10g0478 Cmu10g1307 Cre10g0712 . . Cone14ag1181 Cone15ag1198 . Csa03g00473 . Cme06g02835 Blo07g00882 Blo10g00850 Bda05g00695 Bda12g00936 . Bpe03g00771 . . Sed08g2974 . . . Cma16g00914 . Car16g00887 Cpe14g00739 . Bhi11g00573 Tan01g1750 Cmetu06g1656 . . . . . . . . . . . Lsi05g00561 . Chy06g01849 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004471 2 1 2 3 2 1 2 1 0 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 4 1 42