Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0490 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTCCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTTGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 56.07 MRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5979048 5979698 - ClG42_10g0049000.10 Clacu10g0490 259114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0490 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Clacu10g0490 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Clacu10g0490 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 174 - -
Clacu10g0490 216 MobiDBLite consensus disorder prediction 94 169 - -
Clacu10g0490 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 MobiDBLite consensus disorder prediction 1 28 - -
Clacu10g0490 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g0490 216 MobiDBLite consensus disorder prediction 113 150 - -
Clacu10g0490 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0527 Clacu-Chr8:10429726 Clacu10g0490 Clacu-Chr10:5979048 1.30E-18 dispersed
Clacu09g0321 Clacu-Chr9:2738569 Clacu10g0490 Clacu-Chr10:5979048 3.30E-19 dispersed
Clacu09g2113 Clacu-Chr9:35901052 Clacu10g0490 Clacu-Chr10:5979048 3.50E-52 dispersed
Clacu10g0237 Clacu-Chr10:2864190 Clacu10g0490 Clacu-Chr10:5979048 4.00E-19 dispersed
Clacu10g0490 Clacu-Chr10:5979048 Clacu11g1969 Clacu-Chr11:30637667 6.00E-23 dispersed
Clacu10g0490 Clacu-Chr10:5979048 Clacu07g0244 Clacu-Chr7:2841680 9.20E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48457 PF00847 AP2 5.00E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0490 K09286 - csv:101219993 295.049