Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0497 ATGGTTAGCAAATCATTCCAAATATGCTTGCTCCAACTCGAGCCTATCCAGGATATTTTTGACATTAAAATGGCTGCTTCATCATCCCTTATGGCACACTCTTTGCATGCGCATGCGTCCACTGAAACGGCCATAAAATGCTGTAAGGGCTATATGTACGGCAACTCCCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTAAATTTTCACATGACGAGAATTCATCAAAATGGGAATGCATTGAGAAACGTCCAATGAGAAATGAAATCCGGTGCCGAGCTGTGGAAATTGAGAATTCACTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAATTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTGAAGGGATATTTGATGGCTACCCTGTTCTACGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCGCGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACGATCCGAACTGTTGAGGGATACTCGGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCTAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGGCTCGTGGGAGATCTTGCTAATGGGAGAACTGTAAGGTCACTTGCATATTTGCTCGCCAAGTATAAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAGATGTGAAATGGGAAGAATGCGACAACTTGATGGAAGTTGCGTCAGAGTGTGATGTTGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGAGAGAGGGTTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAAAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGGCAAGCAAAGAATGGTCTCTATATTCGGATGGCACTCGTGAAACTCTTGCTACTTGGTGAATGGCTTGATCCTGTTTGCGAAGGAGAAATGCGAGTTACAATTTGCTGA 1305 41.38 MVSKSFQICLLQLEPIQDIFDIKMAASSSLMAHSLHAHASTETAIKCCKGYMYGNSRIGYSKSKFLTSPKFSHDENSSKWECIEKRPMRNEIRCRAVEIENSLSPFVSKKFELDDVIEAQQFDREILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSQDVKWEECDNLMEVASECDVVYQTRIQRERFGERVDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGEWLDPVCEGEMRVTIC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6044903 6048002 + ClG42_10g0049700.10 Clacu10g0497 259121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0497 434 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 159 166 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 FunFam Aspartate carbamoyltransferase 2 248 403 - -
Clacu10g0497 434 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 113 416 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 244 255 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 371 380 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 159 178 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 381 404 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 Hamap Aspartate carbamoyltransferase [pyrB]. 113 418 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Clacu10g0497 434 FunFam Aspartate carbamoyltransferase 115 247 - -
Clacu10g0497 434 Gene3D Aspartate/ornithine carbamoyltransferase 244 403 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 115 256 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 189 198 - -
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 335 344 - -
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 243 260 - -
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 149 171 - -
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 375 380 - -
Clacu10g0497 434 PRINTS Aspartate carbamoyltransferase signature 397 411 - -
Clacu10g0497 434 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 109 416 - -
Clacu10g0497 434 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 263 414 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Clacu10g0497 434 NCBIfam aspartate carbamoyltransferase 115 416 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Clacu10g0497 434 Gene3D Aspartate/ornithine carbamoyltransferase 116 411 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0497 K00609 - - csv:101220705 729.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0277 Clacu-Chr4:8701449 Clacu10g0497 Clacu-Chr10:6044903 1.30E-35 dispersed
Clacu10g0497 Clacu-Chr10:6044903 Clacu04g0278 Clacu-Chr4:8702801 1.60E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37