Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0518 ATGATGAATAAGGATTCCCTTTTCCACATCGAGAATATCCTTCTCATTCTTCTCAAGCTTTCTATATTCGCATTCTGCTTCGACTTCAGCTTCAGCTTCTTGGGTGCCTTCAGATACCACCAAGCAAATTACATGGTTGATCTAGATATCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACGACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAACGGGAATGTTGTTCAGGATAAAGAGCTGGGGAAGATAATCCAACTTCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTTGTTCAGGCTGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA 471 44.16 MMNKDSLFHIENILLILLKLSIFAFCFDFSFSFLGAFRYHQANYMVDLDIQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6273653 6275517 - ClG42_10g0051800.10 Clacu10g0518 259142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0518 156 FunFam Eukaryotic translation initiation factor SUI1 46 156 - -
Clacu10g0518 156 Gene3D - 35 156 - -
Clacu10g0518 156 NCBIfam translation initiation factor SUI1 49 156 IPR005874 GO:0003743(InterPro)
Clacu10g0518 156 SUPERFAMILY eIF1-like 43 156 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu10g0518 156 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 45 156 - GO:0003723(PANTHER)
Clacu10g0518 156 CDD eIF1_SUI1 72 155 IPR005874 GO:0003743(InterPro)
Clacu10g0518 156 ProSiteProfiles Translation initiation factor SUI1 family profile. 74 144 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu10g0518 156 Pfam Translation initiation factor SUI1 71 145 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1080 Clacu-Chr9:10254417 Clacu10g0518 Clacu-Chr10:6273653 9.50E-57 transposed
Clacu10g0518 Clacu-Chr10:6273653 Clacu02g0187 Clacu-Chr2:1750319 5.60E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0518 K03113 - csv:101214921 228.794