Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0519 ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCGCCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTGGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCTCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACGCTTCGGTAATAAAAAAAGCTGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCACCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGTGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAAGTGGAGAGAGAGGGAAAAAGGGGGACATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGGTTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTCGAGGGATTTTGA 1053 50.43 MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRHRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSVPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGTLGEISPLLEFEQDPVQILDGMMALYLNSQVLRALQESMASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF 350
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 6286688 6287740 - ClG42_10g0051900.10 Clacu10g0519 259143
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0519 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 Gene3D - 103 228 - -
Clacu10g0519 350 CDD F1-ATPase_gamma 35 344 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
Clacu10g0519 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Clacu10g0519 350 FunFam ATP synthase gamma chain 99 228 - -
Clacu10g0519 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 242 347 - -
Clacu10g0519 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 102 - -
Clacu10g0519 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Clacu10g0519 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu10g0519 350 PANTHER ATP SYNTHASE GAMMA CHAIN 29 347 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Clacu10g0519 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2272 Clacu-Chr1:33764821 Clacu10g0519 Clacu-Chr10:6286688 5.00E-102 dispersed
Clacu04g1242 Clacu-Chr4:26518745 Clacu10g0519 Clacu-Chr10:6286688 6.00E-27 dispersed
Clacu10g0519 Clacu-Chr10:6286688 Clacu03g0464 Clacu-Chr3:5009546 2.50E-103 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0519 K02115 - csv:101214682 608.986