Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g0519 | ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCGCCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTGGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCTCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACGCTTCGGTAATAAAAAAAGCTGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCACCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGTGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAAGTGGAGAGAGAGGGAAAAAGGGGGACATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGGTTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTCGAGGGATTTTGA | 1053 | 50.43 | MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRHRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSVPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGTLGEISPLLEFEQDPVQILDGMMALYLNSQVLRALQESMASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6286688 | 6287740 | - | ClG42_10g0051900.10 | Clacu10g0519 | 259143 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g0519 | 350 | NCBIfam | ATP synthase F1 subunit gamma | 35 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | Gene3D | - | 103 | 228 | - | - | |
Clacu10g0519 | 350 | CDD | F1-ATPase_gamma | 35 | 344 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | PRINTS | ATP synthase gamma subunit signature | 294 | 313 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | PRINTS | ATP synthase gamma subunit signature | 106 | 125 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | PRINTS | ATP synthase gamma subunit signature | 202 | 219 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | PRINTS | ATP synthase gamma subunit signature | 325 | 346 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | ProSitePatterns | ATP synthase gamma subunit signature. | 333 | 346 | IPR023632 | - | |
Clacu10g0519 | 350 | FunFam | ATP synthase gamma chain, chloroplastic | 33 | 100 | - | - | |
Clacu10g0519 | 350 | FunFam | ATP synthase gamma chain | 99 | 228 | - | - | |
Clacu10g0519 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 242 | 347 | - | - | |
Clacu10g0519 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 33 | 102 | - | - | |
Clacu10g0519 | 350 | FunFam | ATP synthase gamma chain, chloroplastic | 244 | 347 | - | - | |
Clacu10g0519 | 350 | Hamap | ATP synthase gamma chain [atpG]. | 32 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 35 | 347 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 29 | 347 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
Clacu10g0519 | 350 | Pfam | ATP synthase | 35 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2272 | Clacu-Chr1:33764821 | Clacu10g0519 | Clacu-Chr10:6286688 | 5.00E-102 | dispersed | |
Clacu04g1242 | Clacu-Chr4:26518745 | Clacu10g0519 | Clacu-Chr10:6286688 | 6.00E-27 | dispersed | |
Clacu10g0519 | Clacu-Chr10:6286688 | Clacu03g0464 | Clacu-Chr3:5009546 | 2.50E-103 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g0519 | K02115 | - | csv:101214682 | 608.986 |