Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0535 ATGTGTGCTCTCTCTTCTTCCTCTAATTTTTGTGGGTTGAATTTATGGTTTGGTATTGCGCAACTGCCACCAGAAATTGGGAAGCTCTGGACAGAGACGCGTGAGAAACGCCTAATTTGGCTCAACAAGCTTTCTGAGAATGGCGGAAATAGCCACTCACACCATCCTTCTCAAATTAGCAAATTTGACTCAGTCTCTCTCGATTCCAAACTTGGAGGGTTTCCTACTGCAACAAAGAAGAAAAACAAGCTTCATGAGGAGAAAGTCAATAGGAAGTCTTTGAAAAAGAGCATTAAAGAGTATCATGACACAAAAACTTTAGCCTCATTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAAAAGTTAGGAAAAGGAAACATCTCTGCTCAAATTTTTACATTTTGTGAGCTATCTACGGCTACAAATAACTTCAACCACGAAAATCTGTTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGGCGTCATTGAAAGCACACAACAAATAACGGCCGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAGAGAATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACAAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCACGAAACTGCTAATCCTCCTGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGACGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTATAGTTTTGGTGTTGTGTTTCTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTATCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTCGACCATTGATCAGCGACGTGGTTACGGCCCTTGAATATTTAGCTGCAAACAAGGATGTCGATGCAGACGTAGATGATGAATCAGATTCAGGATCGGTATTGGGATCGGGATCAGATTCAGCTTCTCGTGATAGAAGTAGTAACAATGGAGATAAAAATGTTGATGTTGAGGGTCCCCCGAAAAATGTCTACCTCTTCTTGCTCGGTCTAGATGATTCTGCACTGTGTGCCCTGCTCGTAAGAGTGGACGATATGTCCTTCGATGTAGGCTCGAGTGCATGTGGATTGGTTTGGCTGCAACCTAGCCCTCTAACACAAACCCACTTGCCTGAAGCAACAGATAACATAAAGCCCTCAAAATTTTGGATTATCTATTCTGGGTTTACCCCAAAACCTCTCAAAACGGCTCCTTCTATAACCCACTGCGGGAACAAGCTGGGTAGAGTTGCAGAGATGATGACTTTGGGAGTCTCCACTTCCCAAGCCTCTTCGTTCAGAACTCAATGGCCTTCTTATTTCTTCCTATGGCGGTCTAACTCTGTTCCTAACTCTTCTATTTCCATTTGCGCCTCCTCCAAGGCTCTCTACAGGGCTGAATTTGGTCCCCTGAAGAATGTTGGTGGCGCTTCTCCAAATATGAATATGCTTCACTCTTCCTTTCAGTGTAGACAATCTTCTTTCTTGAGCACCACTTCATTTGTTGAAACGAGACAATATGACAAGGAGAGGGCATTTCTCTCTGATGTAAAGGCTTGGTCTAAGAGTACTATGCAGCTGAAACAAGAGAAGCACTTTAGGTTTATGGAAACTGAGATCCTGACAAAGAAGGATCAAGAAAAGCTAAGAAAGAAAGAAAATCTCGCTGGCTATGGGACTTCACATTGTTATAACAGTCCTTGTCCTCCATATTCTAAGGTTCCGTCAAATTTGGAAAGCAAATGTTCCAATGCTAGTAATGATTCTGATTTTATAGACCATCCAACTAATATGTTATCAGATGGATTCAGTAAACAAGAACCTATGAGTTTTGAACGAACTGAGAATGTTGTAACTATAGATAGGATGAGAAGTGATAGGGCACCTTTACTTGAGAAAATTAAGGTTTCAAGTGGTCAATGTAATGGAGACATTGATTCTTTTGCTGGGAGACGGACCATGACCAAGCCTGAAAATAATGATTTGCATAATCAGGTTGTTCCTATGCAAAGTAAGAAAAAATATACCCTTTCTCAAAATGGAAAGGGATCAATTGTGCCTCATGTACCAAATATTTCACCTAATGGCAGAAAGCAAAACATCTCTTTGGGAAAGGTGAATAGTGTACCGAAAACTATGAAATTTACTGAAGCTGCCAATGGGATAAGGAGGGGTGTAGCTGTGGAAGAATTTTCCAAAGTGACCATCAATGGAAGTGGCACCAAGGCGATGGAAGCACTTGCAACTGCTCACAAGCCAGATATAAAGGAGAGGCTTAGTGGTGTATATGATAGCGTTCTTGTTGTTGATAGTGTATCTGCAGCAAAGGAAGTTGTTTCAATGCTTACTACTAAGTACAGGAATCTTGTGCATGCTTGCGATACTGAGGTGGCCAAGATTGATGTGAAGCAAGAAACACCCGTTGACCATGGTGAAATAATATGCTTCAGTATTTATTCAGGACCAAAAGCAGATTTTGGGAATGGAAAGTCGTGCATCTGGGTTGATGTTCTTGATGGTGGCGGTAAGGAAATTTTGCTTCAATTTGCTCCATTCTTCGAAGACCCTTTGATCAGAAAGGTCTGGCACAACTACAGCTTTGACAATCACATCATTGAAAACTATGGGATTAAGATTTCTGGCTTCCATGCTGACACAATGCACATGGCACGGTTATGGGATTCATCAAGGCGAGTGAATGGTGGATATTCACTTGAAGCTCTTTCTAGTGATACAAAGGTCATGTCTGGTGCTAAATTGGGCCAGGAAAAAGAGTTGATTGGTAAAGTATCTATGAAAACAATCTTTGGCCGGAAGAAGATGAAAAAGGATGGAACTGAAGGCAAACTTATATTCATTCCCCCTGTTGAAGAACTTCAACGAGAAGAACGGAAACCATGGGTATCTTATTCTGCTTTAGATTCGATATGCACGCTGAAGCTTTATGAGAGCTTGAAAAATAAACTGTCTGACATGCCTTGGGAGAGAGATGGAGAAATGATTCCGGATCAAACAATGTTCAACTTTTATGAAGAATATTGGAAACCATTCGGTGAACTTCTTGTCAGAATGGAAACTGAGGGAATGCTGGTTGATAGGACATATCTTGCTGAGATAGAAAAATTGGCCAAAGTGGAACAGGAGGTTGCTGGTAACAGATTTCGTAACTGGGCTTCAAAGTACTGCTCTGATGCCAAGTACATGAATATAGGAAGTGATGCACAAGTGCGTCAATTGCTCTTTGGTGGCACTTGTAACAGTAAGAACCCTGAGGAGTCTCTTCCAACTGGAAGGACATTCAAAGTTCCAAACAGTGAAAAGGTCATTGAAGGAGGGAAAAAAACTCCCAGCAAGTTTCGGAATATTACTTTACATTGCATTAAAGAGGAGCCTTTTTCGACGGAAATGTACACAGCTACTGGTTGGCCTTCAGTGAGTGGGGATGCTCTGAAGATCTTAGCAGGCAAGGTCTCTGCAGAATTTGATGACTTCACCGATGACTTGCAGTCTGACAATGAGGTTGACAACGAATTTGGGATGATGCCTCATGAAGAAAGCAAAAGGCATATTATTGATGAATGTGCAAATATGTCTGATTATGGAACTGCTTTACAAGAATTTGAATCGACGGAGGAGGGTAGGGAAGCCTGTCATGCTATTGCTGCTTTATGCGAAGTCTGCTCTATTGACTCCTTGATATCAAATTTCATCCTTCCCTTACAGGGAAGCAATATATCTGGTAAGAATGGACGTGTGCATTGTTCCTTAAATATCAACACAGAAACTGGCCGACTCTCAGCTCGGAGACCAAATTTGCAGAATCAACCGGCTCTGGAAAAGGATCGGTATAAGATCCGTCAGGCATTTATAGCTGCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGTTGGAACTTAGGATTCTTGCTCATCTTGCCAATTGTAAGAGCATGCTGGAAGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGGACTGCAATGAATATGTACCCTCACATTCGTAAAGCTGTTGAAGAAGGAAACGTGCTTCTTGAGTGGGATCCTCAACCTGGGGAAGATAAACCTCCAGTTCCATTGTTGAAGGATGCCTTTGCTTCTGAAAGAAGGAAAGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTGTTGGCCTTTCCAAGGATTGGAAGGTTACGGTGGAGGAAGCAAAGAAGACGGTTAACTTGTGGTACAATGAAAGGAAAGAGGTCCGTAGGTGGCAAGATCTTCGAATGGCAGAGGCCGAGGAGAAATCATGTGTTCGCACTTTGCTTGGACGAGCTCGTCAGTTTCCCTCAATGAAGCATGCTACTCGTGCCCAGAAAGGGCATATTGAAAGAGCTGCTATCAATACTCCTGTGCAGGGTAGTGCTGCTGATGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTGCAGGTTCATGATGAAGTAATCTTGGAAGGACCGACCGAATCTGCCGAGGTTGCTAAGGCCATTGTTGTCGAGTGCATGTCGAAGCCCTTCAATGGAAAGAACATTCTTAGTGTCGACCTTGCTGTGGATGCAAAGTGTGCACAAAACTGGCATGTCTTTAAGCAGTTTGCTGAGGTTTGA 5127 42.34 MCALSSSSNFCGLNLWFGIAQLPPEIGKLWTETREKRLIWLNKLSENGGNSHSHHPSQISKFDSVSLDSKLGGFPTATKKKNKLHEEKVNRKSLKKSIKEYHDTKTLASFANISFKSDSSRRRYITEEIKKLGKGNISAQIFTFCELSTATNNFNHENLLGEGGFGRVYKGVIESTQQITAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTALEYLAANKDVDADVDDESDSGSVLGSGSDSASRDRSSNNGDKNVDVEGPPKNVYLFLLGLDDSALCALLVRVDDMSFDVGSSACGLVWLQPSPLTQTHLPEATDNIKPSKFWIIYSGFTPKPLKTAPSITHCGNKLGRVAEMMTLGVSTSQASSFRTQWPSYFFLWRSNSVPNSSISICASSKALYRAEFGPLKNVGGASPNMNMLHSSFQCRQSSFLSTTSFVETRQYDKERAFLSDVKAWSKSTMQLKQEKHFRFMETEILTKKDQEKLRKKENLAGYGTSHCYNSPCPPYSKVPSNLESKCSNASNDSDFIDHPTNMLSDGFSKQEPMSFERTENVVTIDRMRSDRAPLLEKIKVSSGQCNGDIDSFAGRRTMTKPENNDLHNQVVPMQSKKKYTLSQNGKGSIVPHVPNISPNGRKQNISLGKVNSVPKTMKFTEAANGIRRGVAVEEFSKVTINGSGTKAMEALATAHKPDIKERLSGVYDSVLVVDSVSAAKEVVSMLTTKYRNLVHACDTEVAKIDVKQETPVDHGEIICFSIYSGPKADFGNGKSCIWVDVLDGGGKEILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKISGFHADTMHMARLWDSSRRVNGGYSLEALSSDTKVMSGAKLGQEKELIGKVSMKTIFGRKKMKKDGTEGKLIFIPPVEELQREERKPWVSYSALDSICTLKLYESLKNKLSDMPWERDGEMIPDQTMFNFYEEYWKPFGELLVRMETEGMLVDRTYLAEIEKLAKVEQEVAGNRFRNWASKYCSDAKYMNIGSDAQVRQLLFGGTCNSKNPEESLPTGRTFKVPNSEKVIEGGKKTPSKFRNITLHCIKEEPFSTEMYTATGWPSVSGDALKILAGKVSAEFDDFTDDLQSDNEVDNEFGMMPHEESKRHIIDECANMSDYGTALQEFESTEEGREACHAIAALCEVCSIDSLISNFILPLQGSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGNVLLEWDPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVTVEEAKKTVNLWYNERKEVRRWQDLRMAEAEEKSCVRTLLGRARQFPSMKHATRAQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILSVDLAVDAKCAQNWHVFKQFAEV 1708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6437837 6460046 + ClG42_10g0053500.10 Clacu10g0535 259159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0535 1708 Gene3D Transferase(Phosphotransferase) domain 1 231 450 - -
Clacu10g0535 1708 Gene3D - 1409 1699 - -
Clacu10g0535 1708 CDD DNA_polA_I_Ecoli_like_exo 934 1172 - -
Clacu10g0535 1708 Gene3D - 1454 1623 - -
Clacu10g0535 1708 FunFam DNA polymerase I 916 1174 - -
Clacu10g0535 1708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g0535 1708 PANTHER DNA POLYMERASE I 879 1705 IPR002298 GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006261(InterPro)|GO:0006302(PANTHER)
Clacu10g0535 1708 ProSiteProfiles Protein kinase domain profile. 154 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0535 1708 FunFam Serine/threonine-protein kinase CDL1-like 125 230 - -
Clacu10g0535 1708 CDD STKc_IRAK 160 429 - -
Clacu10g0535 1708 SUPERFAMILY Protein kinase-like (PK-like) 138 426 IPR011009 -
Clacu10g0535 1708 Gene3D - 917 1174 IPR036397 GO:0003676(InterPro)
Clacu10g0535 1708 Pfam Protein kinase domain 155 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g0535 1708 SUPERFAMILY Ribonuclease H-like 913 1139 IPR012337 -
Clacu10g0535 1708 FunFam Serine/threonine-protein kinase PBS1 231 446 - -
Clacu10g0535 1708 Pfam DNA polymerase family A 1365 1490 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Clacu10g0535 1708 Pfam DNA polymerase family A 1522 1700 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Clacu10g0535 1708 MobiDBLite consensus disorder prediction 827 851 - -
Clacu10g0535 1708 Gene3D Phosphorylase Kinase; domain 1 114 230 - -
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1616 1632 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1475 1488 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1445 1468 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1646 1659 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1423 1438 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 PRINTS DNA-polymerase family A (pol I) signature 1400 1422 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Clacu10g0535 1708 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524(InterPro)
Clacu10g0535 1708 SUPERFAMILY DNA/RNA polymerases 1155 1700 IPR043502 -
Clacu10g0535 1708 Pfam 3'-5' exonuclease 970 1138 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Clacu10g0535 1708 MobiDBLite consensus disorder prediction 440 472 - -
Clacu10g0535 1708 SMART polaultra3 1433 1663 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Clacu10g0535 1708 CDD DNA_pol_A_plastid_like 1290 1699 - -
Clacu10g0535 1708 FunFam DNA polymerase I 1454 1623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1069 Clacu-Chr9:10154840 Clacu10g0535 Clacu-Chr10:6437837 4.50E-165 dispersed
Clacu10g0535 Clacu-Chr10:6437837 Clacu10g2037 Clacu-Chr10:33832738 9.50E-132 dispersed
Clacu10g0535 Clacu-Chr10:6437837 Clacu05g0679 Clacu-Chr5:5690129 4.00E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73867 PF00476 DNA_pol_A 4.10E-73 No_clan Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0535 K02335 - csv:101212518 1856.26