Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0539 ATGATCTCTTCTTTCACTCAATCTGCAAAACCCATTAATGGGTCCGACGTGGTTCTCCGGCGGAGTGGTCCGGCGTTAATCCGGCGGTTTTCATGTCCACCTCCATTGCCGGCGCAAAAACCTCAAGGCTCCGTTGTGTGTATGAAAAATGCTCTCCATATCTCCTCGGTTTCCAATTTTGGGCCGCTGGGAACTCGGAAGAGTGATTTGATCACGTGCAAGGCCTACGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAAATAACGGTGGCCGAAACGCCGTCCGAGGCGGCGAAGAAGGTGAAGATCGGACTGTATTTTGCTCTCTGGTGGAGTTTGAACGTCGTGTTCAACATTTACAACAAGAAGGTTTTGAACGCGTATCCATATCCATGGCTAACCTCCACACTTTCTCTTGCTGTTGGTTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCCGAGGCTCCCAAGACCGATTTCGAGTTCTGGAAATCCTTGTTCCCTGTTGCTGTGGCCCATACAATTGGCCATGTAGCGGCAACAGTGAGCATGTCAAAGGTTGCTGTCTCATTCACTCATATCATCAAGAGTGGGGAGCCTGCATTCAGCGTATTGGTTTCGAGGTTCCTGTTGGGTGAGACTTTTCCTGTTCCAGTCTACCTCTCTCTTCTCCCGATCATTGGTGGCTGTGCGCTTGCTGCCGTGACCGAGCTCAACTTCAATATGATAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGTCTGTTAGTGGAATGAACTACTACGCCTGTTTGTCTATATTGTCCCTTTTGATTCTTACCCCATTCGCAATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTGAGATTGGACCTAATTTTGTTTGGTGGTTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCCTACATGTCGCTGGACGAAATTTCTCCCTTGACATTCAGCATTGGCAACACCATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTCCGCACGCCTATACAACCCGTCAACACTCTCGGAGCTGCAATCGCCGTTCTTGGAACCTTCTTATATTCACAGGCAAAACAATGA 1191 47.94 MISSFTQSAKPINGSDVVLRRSGPALIRRFSCPPPLPAQKPQGSVVCMKNALHISSVSNFGPLGTRKSDLITCKAYEADRSQPIESNIEITVAETPSEAAKKVKIGLYFALWWSLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSEIGPNFVWWLAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPIQPVNTLGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6484350 6487802 - ClG42_10g0053900.10 Clacu10g0539 259163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0539 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Clacu10g0539 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Clacu10g0539 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu10g0539 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1612 Clacu-Chr5:23291699 Clacu10g0539 Clacu-Chr10:6484350 1.50E-184 dispersed
Clacu05g2572 Clacu-Chr5:33644545 Clacu10g0539 Clacu-Chr10:6484350 2.60E-62 dispersed
Clacu09g1956 Clacu-Chr9:34444112 Clacu10g0539 Clacu-Chr10:6484350 1.10E-57 dispersed
Clacu10g0539 Clacu-Chr10:6484350 Clacu01g1369 Clacu-Chr1:25023010 2.40E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0539 K15283 - csv:101216838 735.332