Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0558 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTCCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTAAAGGATTCAAATGCAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAGGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 48.65 MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNASLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6745905 6749203 + ClG42_10g0055800.10 Clacu10g0558 259182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0558 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Clacu10g0558 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Clacu10g0558 234 CDD bZIP 142 173 - -
Clacu10g0558 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Clacu10g0558 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Clacu10g0558 234 CDD bHLH_AtILR3_like 83 155 - -
Clacu10g0558 234 FunFam Transcription factor bHLH34 66 124 - -
Clacu10g0558 234 Gene3D - 77 152 IPR036638 GO:0046983(InterPro)
Clacu10g0558 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Clacu10g0558 234 Coils Coil 123 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0860 Clacu-Chr2:10316964 Clacu10g0558 Clacu-Chr10:6745905 3.10E-60 dispersed
Clacu02g1175 Clacu-Chr2:23659796 Clacu10g0558 Clacu-Chr10:6745905 7.40E-08 dispersed
Clacu03g0509 Clacu-Chr3:5334365 Clacu10g0558 Clacu-Chr10:6745905 4.40E-56 dispersed
Clacu05g0491 Clacu-Chr5:4105657 Clacu10g0558 Clacu-Chr10:6745905 1.40E-27 dispersed
Clacu06g1734 Clacu-Chr6:27948509 Clacu10g0558 Clacu-Chr10:6745905 2.70E-06 dispersed
Clacu10g0558 Clacu-Chr10:6745905 Clacu05g1640 Clacu-Chr5:24311359 5.40E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48459 PF00010 HLH 1.10E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0558 - - - 0.0