Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0589 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAGCCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGAGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACCAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACTCCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGGTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACTTTCAGATAA 1305 49.12 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNSGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAGFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 434
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 7486019 7489963 - ClG42_10g0058900.10 Clacu10g0589 259213
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0589 434 FunFam Transcription factor bHLH123 family 321 385 - -
Clacu10g0589 434 Gene3D - 321 391 IPR036638 GO:0046983(InterPro)
Clacu10g0589 434 SMART finulus 322 366 IPR011598 GO:0046983(InterPro)
Clacu10g0589 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983(InterPro)
Clacu10g0589 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 375 IPR036638 GO:0046983(InterPro)
Clacu10g0589 434 CDD bHLH_AtbHLH_like 317 368 IPR045239 -
Clacu10g0589 434 MobiDBLite consensus disorder prediction 288 317 - -
Clacu10g0589 434 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 413 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu10g0589 434 MobiDBLite consensus disorder prediction 288 309 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2051 Clacu-Chr1:32302755 Clacu10g0589 Clacu-Chr10:7486019 8.00E-25 dispersed
Clacu02g0694 Clacu-Chr2:7154410 Clacu10g0589 Clacu-Chr10:7486019 2.40E-26 dispersed
Clacu03g0529 Clacu-Chr3:5496434 Clacu10g0589 Clacu-Chr10:7486019 8.30E-38 dispersed
Clacu05g2046 Clacu-Chr5:29388641 Clacu10g0589 Clacu-Chr10:7486019 3.10E-26 dispersed
Clacu07g1317 Clacu-Chr7:27958957 Clacu10g0589 Clacu-Chr10:7486019 1.50E-23 dispersed
Clacu07g1533 Clacu-Chr7:29973013 Clacu10g0589 Clacu-Chr10:7486019 3.80E-25 dispersed
Clacu09g0190 Clacu-Chr9:1802108 Clacu10g0589 Clacu-Chr10:7486019 1.00E-17 dispersed
Clacu10g0589 Clacu-Chr10:7486019 Clacu11g0222 Clacu-Chr11:2009827 8.60E-29 dispersed
Clacu10g0589 Clacu-Chr10:7486019 Clacu01g2316 Clacu-Chr1:34026739 4.40E-57 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0589 - - - 0.0