Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g0596 ATGTCCCCAATCAAACCTCCACCACTAAACCGACCGGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTCTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCCAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGTGGAGTTTGATCAAAATGGATCGTTTCCTATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCGTCCGCTAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGGATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCCTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTTAAGACGTACATGGGTCGGCCCTGGAAGAAGTATTCGCGGACAGTCATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTTTAGAGTCAAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA 1473 48.54 MSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGVEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7775859 7778676 + ClG42_10g0059600.10 Clacu10g0596 259220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g0596 490 Gene3D - 171 490 IPR012334 -
Clacu10g0596 490 FunFam Pectinesterase 171 490 - -
Clacu10g0596 490 CDD PMEI-like_3 7 137 - -
Clacu10g0596 490 SUPERFAMILY Pectin lyase-like 174 489 IPR011050 -
Clacu10g0596 490 ProSitePatterns Pectinesterase signature 1. 203 222 IPR018040 -
Clacu10g0596 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 135 IPR035513 -
Clacu10g0596 490 SMART PMEI_2 2 131 IPR006501 GO:0004857(InterPro)
Clacu10g0596 490 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Clacu10g0596 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 134 IPR035513 -
Clacu10g0596 490 PANTHER PECTINESTERASE 20 481 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu10g0596 490 Pfam Plant invertase/pectin methylesterase inhibitor 12 131 IPR006501 GO:0004857(InterPro)
Clacu10g0596 490 NCBIfam pectinesterase inhibitor domain 9 133 IPR006501 GO:0004857(InterPro)
Clacu10g0596 490 Pfam Pectinesterase 177 475 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0865 Clacu-Chr5:7575506 Clacu10g0596 Clacu-Chr10:7775859 4.10E-154 dispersed
Clacu10g0596 Clacu-Chr10:7775859 Clacu11g1635 Clacu-Chr11:27504948 2.30E-91 dispersed
Clacu10g0596 Clacu-Chr10:7775859 Clacu01g0639 Clacu-Chr1:6814566 6.80E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g0596 K01051 - csv:101213944 855.514